WikiPathways: pathway editing for the people AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo PLoS biology 6 (7), e184, 2008 | 770 | 2008 |
WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012 | 634 | 2012 |
PathVisio 3: an extendable pathway analysis toolbox M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo PLoS computational biology 11 (2), e1004085, 2015 | 473 | 2015 |
Presenting and exploring biological pathways with PathVisio MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ... BMC bioinformatics 9, 1-9, 2008 | 429 | 2008 |
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services MP van Iersel, AR Pico, T Kelder, J Gao, I Ho, K Hanspers, BR Conklin, ... BMC bioinformatics 11, 1-7, 2010 | 209 | 2010 |
Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance R Kleemann, M van Erk, L Verschuren, AM van den Hoek, M Koek, ... PloS one 5 (1), e8817, 2010 | 181 | 2010 |
Mining biological pathways using WikiPathways web services T Kelder, AR Pico, K Hanspers, MP Van Iersel, C Evelo, BR Conklin PloS one 4 (7), e6447, 2009 | 171 | 2009 |
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis M Kutmon, T Kelder, P Mandaviya, CTA Evelo, SL Coort PloS one 8 (12), e82160, 2013 | 144 | 2013 |
A combined transcriptomics and lipidomics analysis of subcutaneous, epididymal and mesenteric adipose tissue reveals marked functional differences R Caesar, M Manieri, T Kelder, M Boekschoten, C Evelo, M Müller, ... PLoS one 5 (7), e11525, 2010 | 110 | 2010 |
Correlation network analysis reveals relationships between diet-induced changes in human gut microbiota and metabolic health T Kelder, JHM Stroeve, S Bijlsma, M Radonjic, G Roeselers Nutrition & diabetes 4 (6), e122-e122, 2014 | 95 | 2014 |
Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets T Kelder, BR Conklin, CT Evelo, AR Pico PLoS biology 8 (8), e1000472, 2010 | 65 | 2010 |
Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia A Wagner, N Cohen, T Kelder, U Amit, E Liebman, DM Steinberg, ... Molecular systems biology 11 (3), 791, 2015 | 54 | 2015 |
Alperujo extract, hydroxytyrosol, and 3, 4‐dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin E‐deficient rats—A proteomics and network analysis … G Rodríguez‐Gutiérrez, GG Duthie, S Wood, P Morrice, F Nicol, M Reid, ... Molecular nutrition & food research 56 (7), 1131-1147, 2012 | 47 | 2012 |
Eu. Gene Analyzer a tool for integrating gene expression data with pathway databases D Cavalieri, C Castagnini, S Toti, K Maciag, T Kelder, L Gambineri, ... Bioinformatics 23 (19), 2631-2632, 2007 | 45 | 2007 |
Coordinated and interactive expression of genes of lipid metabolism and inflammation in adipose tissue and liver during metabolic overload W Liang, G Tonini, P Mulder, T Kelder, M van Erk, AM van den Hoek, ... PLoS One 8 (9), e75290, 2013 | 32 | 2013 |
cyNeo4j: connecting Neo4j and Cytoscape G Summer, T Kelder, K Ono, M Radonjic, S Heymans, B Demchak Bioinformatics 31 (23), 3868-3869, 2015 | 31 | 2015 |
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation M Baccini, EM Bachmaier, A Biggeri, MV Boekschoten, FG Bouwman, ... Genes & nutrition 3, 147-151, 2008 | 31 | 2008 |
The emerging world of wikis JC Hu, R Aramayo, D Bolser, T Conway, CG Elsik, M Gribskov, T Kelder, ... Science 320 (5881), 1289, 2008 | 28 | 2008 |
Differential effects of drug interventions and dietary lifestyle in developing type 2 diabetes and complications: a systems biology analysis in LDLr−/− mice M Radonjic, PY Wielinga, S Wopereis, T Kelder, VS Goelela, ... PloS one 8 (2), e56122, 2013 | 27 | 2013 |
A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone L Verschuren, PY Wielinga, T Kelder, M Radonjic, K Salic, R Kleemann, ... BMC medical genomics 7, 1-11, 2014 | 26 | 2014 |