| Ensemble learning models that predict surface protein abundance from single-cell multimodal omics data F Xu, S Wang, X Dai, PA Mundra, J Zheng Methods 189, 65-73, 2021 | 21 | 2021 |
| Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ... Molecular systems biology 17 (10), e10402, 2021 | 15 | 2021 |
| Explaining temporal graph models through an explorer-navigator framework W Xia, M Lai, C Shan, Y Zhang, X Dai, X Li, D Li The Eleventh International Conference on Learning Representations, 2023 | 12 | 2023 |
| PIKE-R2P: Protein–protein interaction network-based knowledge embedding with graph neural network for single-cell RNA to protein prediction X Dai, F Xu, S Wang, PA Mundra, J Zheng BMC bioinformatics 22 (Suppl 6), 139, 2021 | 11 | 2021 |
| CellPLM: pre-training of cell language model beyond single cells H Wen, W Tang, X Dai, J Ding, W Jin, Y Xie, J Tang bioRxiv, 2023.10. 03.560734, 2023 | 5 | 2023 |
| A general single-cell analysis framework via conditional diffusion generative models W Tang, R Liu, H Wen, X Dai, J Ding, H Li, W Fan, Y Xie, J Tang bioRxiv, 2023.10. 13.562243, 2023 | 3 | 2023 |
| Topic judgment helps question similarity prediction in medical faq dialogue systems L Zhu, X Dai, Q Huang, H Xiang, J Zheng 2019 International Conference on Data Mining Workshops (ICDMW), 966-972, 2019 | 3 | 2019 |
| Opera-oriented character relations extraction for role interaction and behaviour Understanding: a deep learning approach X Dai, X Zhao, P Jin, X Cai, H Zhang, C Yang, B Li Behaviour & Information Technology 38 (9), 900-912, 2019 | 3 | 2019 |
| SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology J Ding, L Li, Q Lu, J Venegas, Y Wang, L Wu, W Jin, H Wen, R Liu, ... Journal of Computational Biology, 2024 | 1 | 2024 |
| Biological Factor Regulatory Neural Network X Dai, C Shan, J Zheng, X Li, D Li arXiv preprint arXiv:2304.04982, 2023 | 1 | 2023 |
| AI-powered omics-based drug pair discovery for pyroptosis therapy targeting triple-negative breast cancer B Ouyang, C Shan, S Shen, X Dai, Q Chen, X Su, Y Cao, X Qin, Y He, ... Nature Communications 15 (1), 7560, 2024 | | 2024 |
| Revisiting the Graph Reasoning Ability of Large Language Models: Case Studies in Translation, Connectivity and Shortest Path X Dai, Q Wen, Y Shen, H Wen, D Li, J Tang, C Shan arXiv preprint arXiv:2408.09529, 2024 | | 2024 |
