| Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue D Gyllborg, CM Langseth, X Qian, E Choi, SM Salas, MM Hilscher, ... Nucleic acids research 48 (19), e112-e112, 2020 | 216 | 2020 |
| The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location I Liu, L Jiang, ER Samuelsson, S Marco Salas, A Beck, OA Hack, D Jeong, ... Nature Genetics 54 (12), 1881-1894, 2022 | 97 | 2022 |
| Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma C Ruiz-Moreno, SM Salas, E Samuelsson, S Brandner, MEG Kranendonk, ... BioRxiv, 2022.08. 27.505439, 2022 | 58 | 2022 |
| Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue H Lee, S Marco Salas, D Gyllborg, M Nilsson Scientific reports 12 (1), 7976, 2022 | 48 | 2022 |
| A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung A Sountoulidis, S Marco Salas, E Braun, C Avenel, J Bergenstråhle, ... Nature Cell Biology 25 (2), 351-365, 2023 | 36 | 2023 |
| Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows SM Salas, P Czarnewski, LB Kuemmerle, S Helgadottir, ... BioRxiv, 2023.02. 13.528102, 2023 | 32 | 2023 |
| Direct RNA targeted transcriptomic profiling in tissue using Hybridization-based RNA In Situ Sequencing (HybRISS) H Lee, SM Salas, D Gyllborg, M Nilsson bioRxiv, 2020.12. 02.408781, 2020 | 10 | 2020 |
| Interneuron diversity in the human dorsal striatum LD Garma, L Harder, JM Barba-Reyes, S Marco Salas, M Díez-Salguero, ... Nature Communications 15 (1), 6164, 2024 | 7 | 2024 |
| Padlock Probe–Based Targeted In Situ Sequencing: Overview of Methods and Applications A Magoulopoulou, SM Salas, K Tiklová, ER Samuelsson, MM Hilscher, ... Annual Review of Genomics and Human Genetics 24 (1), 133-150, 2023 | 6 | 2023 |
| Identifying the neurodevelopmental and psychiatric signatures of genomic disorders associated with intellectual disability: a machine learning approach N Donnelly, A Cunningham, SM Salas, M Bracher-Smith, S Chawner, ... Molecular Autism 14 (1), 19, 2023 | 6 | 2023 |
| Spatial Resolution of Mycobacterium tuberculosis Bacteria and Their Surrounding Immune Environments Based on Selected Key Transcripts in Mouse Lungs A Magoulopoulou, X Qian, T Pediatama Setiabudiawan, S Marco Salas, ... Frontiers in Immunology 13, 876321, 2022 | 6 | 2022 |
| Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma. bioRxiv: 2022.2008. 2027.505439 C Ruiz-Moreno, SM Salas, E Samuelsson, S Brandner, MEG Kranendonk, ... | 6 | 2022 |
| Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps S Marco Salas, D Gyllborg, C Mattsson Langseth, M Nilsson BMC bioinformatics 22, 1-15, 2021 | 6 | 2021 |
| Open-source, high-throughput targeted in-situ transcriptomics for developmental biologists H Lee, CM Langseth, SM Salas, A Metousis, ER Alana, F Garcia-Moreno, ... bioRxiv, 2023.10. 10.561689, 2023 | 5 | 2023 |
| Developmental origins of cell heterogeneity in the human lung A Sountoulidis, SM Salas, E Braun, C Avenel, J Bergenstråhle, M Vicari, ... BioRXiv, 2022.01. 11.475631, 2022 | 5 | 2022 |
| Spatial dynamics of the developing human heart E Lázár, R Mauron, Ž Andrusivová, J Foyer, M He, L Larsson, N Shakari, ... bioRxiv, 2024.03. 12.584577, 2024 | 3 | 2024 |
| BirthSeq, a new method to isolate and analyze dated cells in different vertebrates E Rueda-Alaña, M Grillo, E Vazquez, SM Salas, R Senovilla-Ganzo, ... Development, dev. 202429, 2024 | 1 | 2024 |
| BirthSeq, a new method to isolate and analyze dated cells from any tissue in vertebrates E Rueda-Alaña, M Grillo, E Vazquez, S Marco Salas, R Senovilla-Ganzo, ... bioRxiv, 2023.10. 10.559090, 2023 | 1 | 2023 |
| De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks S Marco Salas, X Yuan, C Sylven, M Nilsson, C Wählby, G Partel PLoS Computational Biology 18 (8), e1010366, 2022 | 1 | 2022 |
| Correction to ‘Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue’ D Gyllborg, CM Langseth, X Qian, E Choi, SM Salas, MM Hilscher, ... Nucleic Acids Research 49 (15), 9002-9002, 2021 | 1 | 2021 |
