| OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities AR Zomorrodi, CD Maranas PLoS computational biology 8 (2), e1002363, 2012 | 432 | 2012 |
| Synthetic ecology of microbes: mathematical models and applications AR Zomorrodi, D Segrè Journal of molecular biology 428 (5), 837-861, 2016 | 224 | 2016 |
| d-OptCom: dynamic multi-level and multi-objective metabolic modeling of microbial communities AR Zomorrodi, MM Islam, CD Maranas ACS synthetic biology 3 (4), 247-257, 2014 | 206 | 2014 |
| A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data A Khodayari*, AR Zomorrodi*, JC Liao, CD Maranas (*Joint 1st authors) Metabolic engineering 25, 50-62, 2014 | 204 | 2014 |
| Genome‐scale gene/reaction essentiality and synthetic lethality analysis PF Suthers*, A Zomorrodi*, CD Maranas (*Joint 1st authors) Molecular systems biology 5 (1), 2009 | 200 | 2009 |
| Comparison of PID Controller Tuning Methods M Shahrokhi, A Zomorrodi https://yunus.hacettepe.edu.tr/~ounver/documents/OMU412/Lectures …, 2013 | 199* | 2013 |
| Mathematical optimization applications in metabolic networks AR Zomorrodi, PF Suthers, S Ranganathan, CD Maranas Metabolic engineering 14 (6), 672-686, 2012 | 177 | 2012 |
| k-OptForce: integrating kinetics with flux balance analysis for strain design A Chowdhury, AR Zomorrodi, CD Maranas PLoS computational biology 10 (2), e1003487, 2014 | 162 | 2014 |
| Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities AR Zomorrodi, D Segrè Nature communications 8 (1), 1563, 2017 | 136 | 2017 |
| An integrated computational and experimental study for overproducing fatty acids in Escherichia coli S Ranganathan*, TW Tee*, A Chowdhury#, AR Zomorrodi#, JM Yoon, ... Metabolic engineering 14 (6), 687-704, 2012 | 135 | 2012 |
| Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data AR Zomorrodi, CD Maranas BMC systems biology 4 (1), 1, 2010 | 124 | 2010 |
| Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study MM Leonarda, F Valitutti, H Karathia, M Pujolassos, V Kenyon, B Fanelli, ... Proceedings of the National Academy of Sciences 118 (29), e2020322118, 2021 | 117 | 2021 |
| Optimization methods in metabolic networks CD Maranas, AR Zomorrodi John Wiley & Sons, 2016 | 100 | 2016 |
| Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease MM Leonard, H Karathia, M Pujolassos, J Troisi, F Valitutti, ... Microbiome 130, https://doi.org/10.1186/s40168-020-00906, 2020 | 81 | 2020 |
| Computational modeling of metabolism in microbial communities on a genome-scale AV Colarusso, I Goodchild-Michelman, M Rayle, AR Zomorrodi Current Opinion in Systems Biology 26, 46-57, 2021 | 49 | 2021 |
| Down-regulation of HtrA1 activates the epithelial-mesenchymal transition and ATM DNA damage response pathways N Wang, KA Eckert, AR Zomorrodi, P Xin, W Pan, DA Shearer, J Weisz, ... PloS one 7 (6), e39446, 2012 | 48 | 2012 |
| Bilevel optimization techniques in computational strain design A Chowdhury, AR Zomorrodi, CD Maranas Computers & Chemical Engineering 72, 363-372, 2015 | 47 | 2015 |
| Gut microbiota in celiac disease: microbes, metabolites, pathways and therapeutics KL Olshan, MM Leonard, G Serena, AR Zomorrodi, A Fasano Expert review of clinical immunology 16 (11), 1075-1092, 2020 | 34 | 2020 |
| Optimization‐driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks AR Zomorrodi, JG Lafontaine Rivera, JC Liao, CD Maranas Biotechnology journal 8 (9), 1090-1104, 2013 | 33 | 2013 |
| Coarse-grained optimization-driven design and piecewise linear modeling of synthetic genetic circuits AR Zomorrodi, CD Maranas European Journal of Operational Research 237 (2), 665-676, 2014 | 15 | 2014 |
Costas D. MaranasDonald B. Broughton Professor of Chemical Engineering, Penn State University在 psu.edu 的电子邮件经过验证
