| Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing SP Gordon, E Tseng, A Salamov, J Zhang, X Meng, Z Zhao, D Kang, ... PloS one 10 (7), e0132628, 2015 | 364 | 2015 |
| The epigenomic landscape of prokaryotes MJ Blow, TA Clark, CG Daum, AM Deutschbauer, A Fomenkov, R Fries, ... PLoS genetics 12 (2), e1005854, 2016 | 338 | 2016 |
| A parts list for fungal cellulosomes revealed by comparative genomics CH Haitjema, SP Gilmore, JK Henske, KV Solomon, R De Groot, A Kuo, ... Nature microbiology 2 (8), 1-8, 2017 | 215 | 2017 |
| CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria G Wang, Z Zhao, J Ke, Y Engel, YM Shi, D Robinson, K Bingol, Z Zhang, ... Nature microbiology 4 (12), 2498-2510, 2019 | 119 | 2019 |
| A Cdc42 ortholog is required for penetration and virulence of Magnaporthe grisea W Zheng, Z Zhao, J Chen, W Liu, H Ke, J Zhou, G Lu, AG Darvill, ... Fungal genetics and biology 46 (6-7), 450-460, 2009 | 64 | 2009 |
| Generation of long insert pairs using a Cre-LoxP Inverse PCR approach Z Peng, Z Zhao, N Nath, JL Froula, A Clum, T Zhang, J Cheng, ... PloS one 7 (1), e29437, 2012 | 43 | 2012 |
| Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes R Seshadri, S Roux, KJ Huber, D Wu, S Yu, D Udwary, L Call, S Nayfach, ... Cell genomics 2 (12), 2022 | 23 | 2022 |
| CRAGE-Duet facilitates modular assembly of biological systems for studying plant–microbe interactions B Wang, Z Zhao, LK Jabusch, DM Chiniquy, K Ono, JM Conway, Z Zhang, ... ACS Synthetic Biology 9 (9), 2610-2615, 2020 | 12 | 2020 |
| CRAGE-mediated insertion of fluorescent chromosomal markers for accurate and scalable measurement of co-culture dynamics in Escherichia coli AJC Noonan, Y Qiu, JCH Ho, J Ocampo, KA Vreugdenhil, RA Marr, ... Synthetic Biology 5 (1), ysaa015, 2020 | 10 | 2020 |
| Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE J Ke, Z Zhao, CR Coates, M Hadjithomas, A Kuftin, K Louie, D Weller, ... Metabolic Engineering 69, 188-197, 2022 | 9 | 2022 |
| Microfabrication of a chamber for high-resolution, in situ imaging of the whole root for plant–microbe interactions LK Jabusch, PW Kim, D Chiniquy, Z Zhao, B Wang, B Bowen, AJ Kang, ... International journal of molecular sciences 22 (15), 7880, 2021 | 8 | 2021 |
| An integrated workflow for phenazine-modifying enzyme characterization RC Coates, BP Bowen, E Oberortner, L Thomashow, M Hadjithomas, ... Journal of Industrial Microbiology and Biotechnology 45 (7), 567-577, 2018 | 8 | 2018 |
| CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nat Microbiol 4: 2498–2510 G Wang, Z Zhao, J Ke, Y Engel, YM Shi, D Robinson, K Bingol, Z Zhang, ... | 6 | 2019 |
| Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems Z Zhao, JF Cheng, Y Yoshikuni STAR protocols 3 (3), 101546, 2022 | 3 | 2022 |
| Method for Making Mate-Pair Libraries F Chen, Z Peng, Z Zhao, N Nath, JL Froula US Patent App. 13/535,167, 2012 | 2 | 2012 |
| Pathway integration and expression in host cells Y Yoshikuni, W Gaoyan, Z Zhao, RC Coates, J Cheng, D Robinson US Patent 11,674,145, 2023 | 1 | 2023 |
| Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida R Gauttam, T Eng, Z Zhao, Q ul ain Rana, BA Simmons, Y Yoshikuni, ... Microbial Biotechnology 16 (3), 645-661, 2023 | 1 | 2023 |
| Preparing mate-paired Illumina libraries using cre recombinase Z Peng, N Nath, Z Zhao, JL Froula, JF Cheng, F Chen Site-Specific Recombinases: Methods and Protocols, 247-261, 2017 | 1 | 2017 |
| Functional plasticity of HCO3-uptake and CO2 fixation in Cupriavidus necator H16 J Panich, E Toppari, S Tejedor-Sanz, B Fong, E Dugan, Y Chen, ... bioRxiv, 2024.05. 07.593039, 2024 | | 2024 |
| Pathway integration and expression in host cells Y Yoshikuni, W Gaoyan, Z Zhao, RC Coates, J Cheng, D Robinson US Patent App. 18/311,796, 2023 | | 2023 |
