| An evolutionary algorithm for large traveling salesman problems HK Tsai, JM Yang, YF Tsai, CY Kao IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics) 34 …, 2004 | 192 | 2004 |
| Statistical methods for identifying yeast cell cycle transcription factors HK Tsai, HHS Lu, WH Li Proceedings of the National Academy of Sciences 102 (38), 13532-13537, 2005 | 112 | 2005 |
| Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues JH Cheng, DZC Pan, ZTY Tsai, HK Tsai Scientific reports 5 (1), 12648, 2015 | 73 | 2015 |
| Cysteine separations profiles on protein sequences infer disulfide connectivity E Zhao, HL Liu, CH Tsai, HK Tsai, C Chan, CY Kao Bioinformatics 21 (8), 1415-1420, 2005 | 52 | 2005 |
| H3K4 methylation at active genes mitigates transcription-replication conflicts during replication stress SY Chong, S Cutler, JJ Lin, CH Tsai, HK Tsai, S Biggins, T Tsukiyama, ... Nature communications 11 (1), 809, 2020 | 51 | 2020 |
| Solving traveling salesman problems by combining global and local search mechanisms HK Tsai, JM Yang, CY Kao Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat …, 2002 | 49 | 2002 |
| Some issues of designing genetic algorithms for traveling salesman problems HK Tsai, JM Yang, YF Tsai, CY Kao Soft Computing 8, 689-697, 2004 | 46 | 2004 |
| Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression HM Sung, TY Wang, D Wang, YS Huang, JP Wu, HK Tsai, J Tzeng, ... Molecular biology and evolution 26 (11), 2533-2538, 2009 | 39 | 2009 |
| GEM: A Gaussian evolutionary method for predicting protein side‐chain conformations JM Yang, CH Tsai, MJ Hwang, HK Tsai, JK Hwang, CY Kao Protein Science 11 (8), 1897-1907, 2002 | 36 | 2002 |
| Contribution of sequence motif, chromatin state, and DNA structure features to predictive models of transcription factor binding in yeast ZTY Tsai, SH Shiu, HK Tsai PLoS computational biology 11 (8), e1004418, 2015 | 32 | 2015 |
| MYBS: a comprehensive web server for mining transcription factor binding sites in yeast HK Tsai, MY Chou, CH Shih, GTW Huang, TH Chang, WH Li Nucleic acids research 35 (suppl_2), W221-W226, 2007 | 31 | 2007 |
| NK cell receptor and ligand composition influences the clearance of SARS-CoV-2 WC Hsieh, EY Lai, YT Liu, YF Wang, YS Tzeng, L Cui, YJ Lai, HC Huang, ... The Journal of Clinical Investigation 131 (21), 2021 | 30 | 2021 |
| Applying genetic algorithms to finding the optimal gene order in displaying the microarray data HK Tsai, JM Yang, CY Kao Proceedings of the 4th Annual Conference on Genetic and Evolutionary …, 2002 | 30 | 2002 |
| Method for identifying transcription factor binding sites in yeast HK Tsai, GTW Huang, MY Chou, HHS Lu, WH Li Bioinformatics 22 (14), 1675-1681, 2006 | 29 | 2006 |
| An evolutionary approach for gene expression patterns HK Tsai, JM Yang, YF Tsai, CY Kao IEEE Transactions on Information Technology in Biomedicine 8 (2), 69-78, 2004 | 27 | 2004 |
| Ranking genes for discriminability on microarray data HY Chuang, HK Tsai, YF Tsai, CY Kao Journal of Information Science and Engineering 19 (6), 953-966, 2003 | 26* | 2003 |
| Discovering gapped binding sites of yeast transcription factors CY Chen, HK Tsai, CM Hsu, MJ May Chen, HG Hung, GTW Huang, WH Li Proceedings of the National Academy of Sciences 105 (7), 2527-2532, 2008 | 25 | 2008 |
| Heterogeneous selection genetic algorithms for traveling salesman problems HK Tsai, JM Yang, YF Tsai, CY Kao Engineering Optimization 35 (3), 297-311, 2003 | 24 | 2003 |
| Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs WH Liu, ZTY Tsai, HK Tsai BMC genomics 18, 1-8, 2017 | 20 | 2017 |
| The CrdRS two‐component system in Helicobacter pylori responds to nitrosative stress CL Hung, HH Cheng, WC Hsieh, ZTY Tsai, HK Tsai, CH Chu, WP Hsieh, ... Molecular Microbiology 97 (6), 1128-1141, 2015 | 20 | 2015 |
