| EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps S Lindert, N Alexander, N Wötzel, M Karakaş, PL Stewart, J Meiler Structure 20 (3), 464-478, 2012 | 104 | 2012 |
| EM-fold: De novo folding of α-helical proteins guided by intermediate-resolution electron microscopy density maps S Lindert, R Staritzbichler, N Wötzel, M Karakaş, PL Stewart, J Meiler Structure 17 (7), 990-1003, 2009 | 104 | 2009 |
| Simultaneous prediction of protein secondary structure and transmembrane spans JK Leman, R Mueller, M Karakas, N Woetzel, J Meiler Proteins: Structure, Function, and Bioinformatics 81 (7), 1127-1140, 2013 | 86 | 2013 |
| BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements M Karakaş, N Woetzel, R Staritzbichler, N Alexander, BE Weiner, J Meiler PLoS One 7 (11), e49240, 2012 | 60 | 2012 |
| BCL:: Score—knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements N Woetzel, M Karakaş, R Staritzbichler, R Müller, BE Weiner, J Meiler PloS one 7 (11), e49242, 2012 | 58 | 2012 |
| BCL:: MP-fold: folding membrane proteins through assembly of transmembrane helices BE Weiner, N Woetzel, M Karakaş, N Alexander, J Meiler Structure 21 (7), 1107-1117, 2013 | 52 | 2013 |
| BCL:: MP‐fold: Membrane protein structure prediction guided by EPR restraints AW Fischer, NS Alexander, N Woetzel, M Karakas, BE Weiner, J Meiler Proteins: Structure, Function, and Bioinformatics 83 (11), 1947-1962, 2015 | 42 | 2015 |
| BCL:: Fold—protein topology determination from limited NMR restraints BE Weiner, N Alexander, LR Akin, N Woetzel, M Karakas, J Meiler Proteins: Structure, Function, and Bioinformatics 82 (4), 587-595, 2014 | 32 | 2014 |
| Ab initio protein modeling into CryoEM density maps using EM‐Fold S Lindert, T Hofmann, N Wötzel, M Karakaş, PL Stewart, J Meiler Biopolymers 97 (9), 669-677, 2012 | 29 | 2012 |
| BCL::Contact–Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination M Karakaş, N Woetzel, J Meiler Journal of Computational Biology 17 (2), 153-168, 2010 | 13 | 2010 |
| BCL:: Fold-De novo protein structure prediction by assembly of secondary structure elements M Karakas Vanderbilt University, 2011 | | 2011 |
| Cryo-EM Guided de novo Protein Fold Elucidation S Lindert, R Staritzbichler, N Woetzel, M Karakas, P Stewart, J Meiler Biophysical Journal 96 (3), 654a, 2009 | | 2009 |
