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Federico Baldini
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Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele
Microbiome 7, 1-18, 2019
289*2019
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
E Bauer, J Zimmermann, F Baldini, I Thiele, C Kaleta
PLoS computational biology 13 (5), e1005544, 2017
2452017
Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions
F Baldini, J Hertel, E Sandt, CC Thinnes, L Neuberger-Castillo, L Pavelka, ...
BMC biology 18, 1-21, 2020
2012020
Integrated analyses of microbiome and longitudinal metabolome data reveal microbial-host interactions on sulfur metabolism in Parkinson’s disease
J Hertel, AC Harms, A Heinken, F Baldini, CC Thinnes, E Glaab, ...
Cell reports 29 (7), 1767-1777. e8, 2019
1332019
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
F Baldini, A Heinken, L Heirendt, S Magnusdottir, R M T Fleming, I Thiele
Bioinformatics, 2018
1332018
Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome
WF Kindschuh, F Baldini, MC Liu, J Liao, Y Meydan, HH Lee, A Heinken, ...
Nature microbiology 8 (2), 246-259, 2023
302023
The Salivary Microbiome and Predicted Metabolite Production Are Associated with Barrett's Esophagus and High-Grade Dysplasia or Adenocarcinoma
QS Solfisburg, F Baldini, B Baldwin-Hunter, GI Austin, HH Lee, H Park, ...
Cancer Epidemiology, Biomarkers & Prevention 33 (3), 371-380, 2024
3*2024
Su1240 LACTATE SUPRESSES GROWTH OF BARRETT'S ESOPHAGUS AND ESOPHAGEAL ADENOCARCNIOMA PATIENT DERIVED ORGANOIDS
SH Su, JT Gabre, UM Sachdeva, S Flashner, QS Solfisburg, F Baldini, ...
Gastroenterology 164 (6), S-562, 2023
2023
pymgpipe: microbiome metabolic modeling in Python
Y Meydan, F Baldini, T Korem
Journal of open source software 8 (88), 2023
2023
DEVELOPING INDIVIDUAL-BASED GUT MICROBIOME METABOLIC MODELS FOR THE INVESTIGATION OF PARKINSON’S DISEASE-ASSOCIATED INTESTINAL MICROBIAL COMMUNITIES
F Baldini
Unilu-University of Luxembourg, Belvaux, Luxembourg, 2019
2019
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