Local epigenomic state cannot discriminate interacting and non-interacting enhancer–promoter pairs with high accuracy W Xi, MA Beer PLoS computational biology 14 (12), e1006625, 2018 | 52 | 2018 |
Loop competition and extrusion model predicts CTCF interaction specificity W Xi, MA Beer Nature communications 12 (1), 1046, 2021 | 38 | 2021 |
Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions R Luo, J Yan, JW Oh, W Xi, D Shigaki, W Wong, HS Cho, D Murphy, ... Nature Genetics, 1-11, 2023 | 16* | 2023 |
An encyclopedia of enhancer-gene regulatory interactions in the human genome AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ... bioRxiv, 2023 | 12 | 2023 |
Using QC-Blind for quality control and contamination screening of bacteria DNA sequencing data without reference genome W Xi, Y Gao, Z Cheng, C Chen, M Han, P Yang, G Xiong, K Ning Frontiers in microbiology 10, 1560, 2019 | 11 | 2019 |
The Impact of Genomic Variation on Function (IGVF) Consortium IGVF Consortium ArXiv, 2023 | 6 | 2023 |
A Living Eukaryotic Autocementation Kit from Surface Display of Silica Binding Peptides on Yarrowia lipolytica S Tang, W Xi, Z Cheng, L Yin, R Li, G Wu, W Liu, J Xu, S Xiang, Y Zheng, ... ACS synthetic biology 5 (12), 1466-1474, 2016 | 4 | 2016 |
PROBABILISTIC MODELING OF CHROMATIN INTERACTIONS W Xi Johns Hopkins University, 2022 | | 2022 |