Decoupling function and taxonomy in the global ocean microbiome S Louca, LW Parfrey, M Doebeli Science 353 (6305), 1272-1277, 2016 | 2270 | 2016 |
Function and functional redundancy in microbial systems S Louca, MF Polz, F Mazel, MBN Albright, JA Huber, MI O'Connor, ... Nature Ecology & Evolution 2, 936-943, 2018 | 1095 | 2018 |
High taxonomic variability despite stable functional structure across microbial communities S Louca, SMS Jacques, APF Pires, JS Leal, DS Srivastava, LW Parfrey, ... Nature Ecology & Evolution 1, 0015, 2016 | 473 | 2016 |
Efficient comparative phylogenetics on large trees S Louca, M Doebeli Bioinformatics 34 (6), 1053–1055, 2017 | 423 | 2017 |
Extant timetrees are consistent with a myriad of diversification histories S Louca, MW Pennell Nature 580, 502-505, 2020 | 412 | 2020 |
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem S Louca, M Doebeli, LW Parfrey Microbiome 6, 41, 2018 | 316 | 2018 |
A census-based estimate of Earth's bacterial and archaeal diversity S Louca, F Mazel, M Doebeli, WL Parfrey PLOS Biology 17 (2), e3000106, 2019 | 213 | 2019 |
Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone S Louca, AK Hawley, S Katsev, M Torres-Beltran, MP Bhatia, ... Proceedings of the National Academy of Sciences 113 (40), E5925-E5933, 2016 | 106 | 2016 |
Moving forward in circles: challenges and opportunities in modelling population cycles F Barraquand, S Louca, KC Abbott, CA Cobbold, F Cordoleani, ... Ecology Letters 20 (8), 1074-1092, 2017 | 101 | 2017 |
Solutions in microbiome engineering: prioritizing barriers to organism establishment MBN Albright, S Louca, DE Winkler, KL Feeser, SJ Haig, KL Whiteson, ... ISME Journal 16, 331-338, 2022 | 91 | 2022 |
Bacterial diversification through geological time S Louca, PM Shih, MW Pennell, WW Fischer, LW Parfrey, M Doebeli Nature Ecology & Evolution 2, 1458-1467, 2018 | 83 | 2018 |
Functional structure of the bromeliad tank microbiome is strongly shaped by local geochemical conditions S Louca, S Jacques, APF Pires, JS Leal, AL González, M Doebeli, ... Environmental Microbiology 19 (8), 3132-3151, 2017 | 67 | 2017 |
Calibration and analysis of genome-based models for microbial ecology S Louca, M Doebeli Elife 4, e08208, 2015 | 62 | 2015 |
The rates of global bacterial and archaeal dispersal S Louca ISME Journal 16, 159-167, 2021 | 53 | 2021 |
Why extinction estimates from extant phylogenies are so often zero S Louca, MW Pennell Current Biology 31, 3168-3173, 2021 | 52 | 2021 |
Transient dynamics of competitive exclusion in microbial communities S Louca, M Doebeli Environmental microbiology 18 (6), 1863-1874, 2016 | 46 | 2016 |
Fundamental identifiability limits in molecular epidemiology S Louca, A McLaughlin, A MacPherson, JB Joy, M W Pennell Molecular Biology and Evolution 38, 4010-4024, 2021 | 40 | 2021 |
Taxonomic variability and functional stability in microbial communities infected by phages S Louca, M Doebeli Environmental Microbiology 19 (10), 3863-3878, 2017 | 40 | 2017 |
The information science of microbial ecology AS Hahn, KM Konwar, S Louca, NW Hanson, SJ Hallam Current opinion in microbiology 31, 209-216, 2016 | 39 | 2016 |
Unifying phylogenetic birth-death models in epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell Systematic Biology 71, 172-189, 2022 | 38 | 2022 |