| jvenn: an interactive Venn diagram viewer P Bardou, J Mariette, F Escudié, C Djemiel, C Klopp BMC bioinformatics 15, 1-7, 2014 | 1804 | 2014 |
| Inferring microbiota functions from taxonomic genes: a review C Djemiel, PA Maron, S Terrat, S Dequiedt, A Cottin, L Ranjard GigaScience 11, giab090, 2022 | 71 | 2022 |
| Characterization of bacterial and fungal community dynamics by high-throughput sequencing (HTS) metabarcoding during flax dew-retting C Djemiel, S Grec, S Hawkins Frontiers in microbiology 8, 2052, 2017 | 48 | 2017 |
| Multimodal assessment of flax dew retting and its functional impact on fibers and natural fiber composites B Chabbert, J Padovani, C Djemiel, J Ossemond, A Lemaître, ... Industrial crops and products 148, 112255, 2020 | 40 | 2020 |
| Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids U Cenci, SJ Sibbald, BA Curtis, R Kamikawa, L Eme, D Moog, B Henrissat, ... BMC biology 16, 1-23, 2018 | 38 | 2018 |
| Biogeography of soil microbial habitats across France B Karimi, J Villerd, S Dequiedt, S Terrat, N Chemidlin‐Prévost Bouré, ... Global Ecology and Biogeography, 2020 | 29 | 2020 |
| BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons C Djemiel, S Dequiedt, B Karimi, A Cottin, T Girier, Y El Djoudi, P Wincker, ... BMC bioinformatics 21, 1-21, 2020 | 24 | 2020 |
| Targeted metagenomics of retting in flax: The beginning of the quest to harness the secret powers of the microbiota C Djemiel, E Goulas, N Badalato, B Chabbert, S Hawkins, S Grec Frontiers in Genetics 11, 581664, 2020 | 24 | 2020 |
| A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses A Hakimzadeh, A Abdala Asbun, D Albanese, M Bernard, D Buchner, ... Molecular Ecology Resources 24 (5), e13847, 2024 | 23 | 2024 |
| Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production C Djemiel, S Dequiedt, B Karimi, A Cottin, W Horrigue, A Bailly, ... Frontiers in Microbiology 13, 889788, 2022 | 23 | 2022 |
| µgreen-db: a reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria C Djemiel, D Plassard, S Terrat, O Crouzet, J Sauze, S Mondy, V Nowak, ... Scientific Reports 10 (1), 5915, 2020 | 23 | 2020 |
| ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition S Terrat, C Djemiel, C Journay, B Karimi, S Dequiedt, W Horrigue, ... Methods in Ecology and Evolution, 2019 | 10 | 2019 |
| Urban land uses shape soil microbial abundance and diversity A Christel, S Dequiedt, N Chemidlin-Prevost-Bouré, F Mercier, J Tripied, ... Science of The Total Environment 883, 163455, 2023 | 8 | 2023 |
| Le RMQS au service de l’écologie microbienne des sols français S Dequiedt, B Karimi, NC Prévost-Bouré, S Terrat, W Horrigue, C Djemiel, ... Etude et Gestion des Sols 27 (1), 51-72, 2020 | 8 | 2020 |
| Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area N Chemidlin Prévost-Bouré, B Karimi, S Sadet-Bourgeteau, C Djemiel, ... Scientific Reports 11 (1), 18144, 2021 | 7 | 2021 |
| Legacy of land-cover changes on soil microbiology in Burgundy vineyards (Pernand-Vergelesses, France). A Quiquerez, JP Garcia, S Dequiedt, C Djemiel, S Terrat, O Mathieu, ... 14th International Terroir Congress & 2nd ClimWine Symposium 56 (2), 223-237, 2022 | 5 | 2022 |
| Biogeographical patterns of the soil fungal: bacterial ratio across France C Djemiel, S Dequiedt, A Bailly, J Tripied, M Lelièvre, W Horrigue, ... Msphere 8 (5), e00365-23, 2023 | 2 | 2023 |
| La caractérisation des communautés microbiennes du sol à l'échelle de la France pour évaluer l’effet de l’usage des sols S Terrat, B Karimi, S Dequiedt, NC Prévost-Bouré, W Horrigue, C Djemiel, ... Innovations Agronomiques 69, 27-37, 2018 | 2 | 2018 |
| Differential responses of soil microbial biomass, diversity and interactions to land use intensity at a territorial scale A Christel, NC Prevost-Bouré, S Dequiedt, N Saby, F Mercier, J Tripied, ... Science of the Total Environment 906, 167454, 2024 | 1 | 2024 |
| Dynamic of bacterial and archaeal diversity in a tropical soil over 6 years of repeated organic and inorganic fertilization S Sadet-Bourgeteau, C Djemiel, N Chemidlin Prévost-Bouré, F Feder Frontiers in Microbiology 13, 943314, 2022 | 1 | 2022 |
