GTRD: an integrated view of transcription regulation S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ... Nucleic acids research 49 (D1), D104-D111, 2021 | 168 | 2021 |
BioUML—Towards a universal research platform F Kolpakov, I Akberdin, I Kiselev, S Kolmykov, Y Kondrakhin, M Kulyashov, ... Nucleic Acids Research 50 (W1), W124-W131, 2022 | 13 | 2022 |
A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus M Kulyashov, SE Peltek, IR Akberdin Microorganisms 8 (7), 1002, 2020 | 13 | 2020 |
Description, characteristic and algorithm for creation of a dictionary of cell types and tissues in the GTRD database MA Kulyashov, SK Kolmykov, IS Evshin, FA Kolpakov CEUR Workshop Proceedings 2569, 13-18, 2020 | 3 | 2020 |
State-of the-art constraint-based modeling of microbial metabolism: from basics to context-specific models with a focus on methanotrophs MA Kulyashov, SK Kolmykov, TM Khlebodarova, IR Akberdin Microorganisms 11 (12), 2987, 2023 | 2 | 2023 |
A bird’s-eye overview of molecular mechanisms regulating feed intake in chickens—with mammalian comparisons AR Volyanskaya, IR Akberdin, MA Kulyashov, IS Yevshin, MN Romanov, ... Animal Nutrition, 2024 | | 2024 |
Reconstruction of a genome-scale metabolic model for chicken whole embryo considering transcriptomics data IR Akberdin, MA Kulyashov, SK Kolmykov, SS Pintus, IS Yevshin, ... Bioinformatics of genome regulation and structure/systems biology (BGRS/SB …, 2022 | | 2022 |
Deciphering a Cu-dependent metabolism of the Methylotuvimicrobium alcaliphilum 20ZR methanotroph by integration of transcriptomics data into a genome-scale metabolic model M Kulyashov, S Kolmykov, M Kalyuzhnaya, I Akberdin Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2022 | | 2022 |
BioUML––towards a universal research platform Y Kondrakhin, M Kulyashov, E Kutumova, S Pintus, A Ryabova, ... Nucleic Acids Research, 1, 2022 | | 2022 |
Advanced data curation in GTRD database: hierarchical dictionaries of cell types and experimental factors MA Kulyashov, SK Kolmykov, IS Yevshin, FA Kolpakov 2020 Cognitive Sciences, Genomics and Bioinformatics (CSGB), 23-27, 2020 | | 2020 |
Integration of transcriptomics data into a genome-scale metabolic model of the methanotrophic bacterium Methylotuvimicrobium alcaliphilum 20ZR MA Kulyashov, SK Kolmykov, IS Evshin, TM Khlebodarova, ... Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2020 | | 2020 |
Genome-scale metabolic modeling of 2, 3-butanediol production by Geobacillus icigianus MA Kulyashov, IR Akberdin Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2020 | | 2020 |
Genome-scale modeling of carbon assimilation in Geobacillus icigianus M Kulyashov, I Akberdin, A Rozanov, S Peltek SI Kabanikhin, Professor, Corresponding Member of the RAS, Institute of …, 2018 | | 2018 |