MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 445* | 2020 |
Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks AV Sastry, S Poudel, K Rychel, R Yoo, CR Lamoureux, S Chauhan, ... BioRxiv, 2021.07. 01.450581, 2021 | 34 | 2021 |
Machine learning of all Mycobacterium tuberculosis H37Rv RNA-seq data reveals a structured interplay between metabolism, stress response, and infection R Yoo, K Rychel, S Poudel, T Al-Bulushi, Y Yuan, S Chauhan, ... MSphere 7 (2), e00033-22, 2022 | 29 | 2022 |
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius SM Chauhan, S Poudel, K Rychel, C Lamoureux, R Yoo, T Al Bulushi, ... Frontiers in Microbiology 12, 753521, 2021 | 22 | 2021 |
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa A Rajput, H Tsunemoto, AV Sastry, R Szubin, K Rychel, SM Chauhan, ... Nucleic acids research 50 (17), 9675-9688, 2022 | 19 | 2022 |
Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family A Rajput, SM Chauhan, OS Mohite, JC Hyun, O Ardalani, LJ Jahn, ... Food microbiology 115, 104334, 2023 | 17 | 2023 |
Pan-genome analysis of transcriptional regulation in six Salmonella enterica serovar typhimurium strains reveals their different regulatory structures Y Yuan, Y Seif, K Rychel, R Yoo, S Chauhan, S Poudel, T Al-Bulushi, ... Msystems 7 (6), e00467-22, 2022 | 9 | 2022 |
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms KT Decker, Y Gao, K Rychel, T Al Bulushi, SM Chauhan, D Kim, BK Cho, ... Nucleic acids research 50 (D1), D1077-D1084, 2022 | 8 | 2022 |
Machine learning of all Mycobacterium tuberculosis H37Rv RNA-seq data reveals a structured interplay between metabolism, stress response, and infection. MSphere. 2022; 7 (2 … R Yoo, K Rychel, S Poudel, T Al-Bulushi, Y Yuan, S Chauhan DOI 10, 00033-22, 0 | 6 | |
Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks. bioRxiv 2021.07. 01.450581 AV Sastry, S Poudel, K Rychel, R Yoo, CR Lamoureux, S Chauhan, ... | 5 | 2021 |
Pan-genomic analysis of transcriptional modules across Salmonella Typhimurium reveals the regulatory landscape of different strains Y Yuan, Y Seif, K Rychel, R Yoo, S Chauhan, S Poudel, T Al-bulushi, ... bioRxiv, 2022.01. 11.475931, 2022 | 4 | 2022 |
Using the E. coli Alleleome in Strain Design P Phaneuf, ZD Jarczynska, V Kandasamy, S Chauhan, AM Feist, ... bioRxiv, 2023.09. 17.558058, 2023 | 2 | 2023 |
The Pangenome of Escherichia coli SM Chauhan, O Ardalani, JC Hyun, PV Phaneuf, JM Monk, BO Palsson bioRxiv, 2024.06. 07.598014, 2024 | 1 | 2024 |
Genomic insights into Lactobacillaceae: Analyzing the “Alleleome” of core pangenomes for enhanced understanding of strain diversity and revealing Phylogroup … AS Harke, J Josephs-Spauling, OS Mohite, SM Chauhan, O Ardalani, ... bioRxiv, 2023.09. 22.558971, 2023 | 1 | 2023 |
Representation of Prepositions in ESL Textbooks of Lower Primary Classes: A Study of NCERT Textbooks in India S Chauhan, S Ghosh International Journal of Linguistics, Literature and Translation 7 (10), 75-84, 2024 | | 2024 |