| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 775 | 2017 |
| Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes HH Lin, YC Liao Scientific reports 6 (1), 24175, 2016 | 255 | 2016 |
| CISA: contig integrator for sequence assembly of bacterial genomes SH Lin, YC Liao PloS one 8 (3), e60843, 2013 | 254 | 2013 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2 I Thiele, DR Hyduke, B Steeb, G Fankam, DK Allen, S Bazzani, ... BMC systems biology 5, 1-9, 2011 | 172 | 2011 |
| An Experimentally Validated Genome-Scale Metabolic Reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228 YC Liao, TW Huang, FC Chen, P Charusanti, JSJ Hong, HY Chang, ... Journal of bacteriology 193 (7), 1710-1717, 2011 | 144 | 2011 |
| Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus YC Liao, MS Lee, CY Ko, CA Hsiung Bioinformatics 24 (4), 505-512, 2008 | 110 | 2008 |
| Completing bacterial genome assemblies: strategy and performance comparisons YC Liao, SH Lin, HH Lin Scientific reports 5 (1), 8747, 2015 | 93 | 2015 |
| Overexpressed hPTTG1 promotes breast cancer cell invasion and metastasis by regulating GEF-H1/RhoA signalling YC Liao, JW Ruan, I Lua, MH Li, WL Chen, JRY Wang, RH Kao, JH Chen Oncogene 31 (25), 3086-3097, 2012 | 78 | 2012 |
| Chronic treatment with aripiprazole induces differential gene expression in the rat frontal cortex MC Cheng, DL Liao, CA Hsiung, CY Chen, YC Liao, CH Chen International Journal of Neuropsychopharmacology 11 (2), 207-216, 2008 | 73 | 2008 |
| GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization YC Liao, MH Tsai, FC Chen, CA Hsiung Bioinformatics 28 (13), 1752-1758, 2012 | 64 | 2012 |
| Identification of a gut microbiota member that ameliorates DSS-induced colitis in intestinal barrier enhanced Dusp6-deficient mice CS Chang, YC Liao, CT Huang, CM Lin, CHY Cheung, JW Ruan, WH Yu, ... Cell Reports 37 (8), 2021 | 50 | 2021 |
| MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation YC Liao, HH Lin, A Sabharwal, EM Haase, FA Scannapieco Journal of microbiological methods 113, 72-74, 2015 | 44 | 2015 |
| Identifying potential immunodominant positions and predicting antigenic variants of influenza A/H3N2 viruses MS Lee, MC Chen, YC Liao, CA Hsiung Vaccine 25 (48), 8133-8139, 2007 | 43 | 2007 |
| Completing circular bacterial genomes with assembly complexity by using a sampling strategy from a single MinION run with barcoding YC Liao, HW Cheng, HC Wu, SC Kuo, TLY Lauderdale, FJ Chen Frontiers in microbiology 10, 2068, 2019 | 35 | 2019 |
| Molecular Epidemiology of Emerging Carbapenem Resistance in Acinetobacter nosocomialis and Acinetobacter pittii in Taiwan, 2010 to 2014 FJ Chen, WC Huang, YC Liao, HY Wang, JF Lai, SC Kuo, TL Lauderdale, ... Antimicrobial Agents and Chemotherapy 63 (4), 10.1128/aac. 02007-18, 2019 | 33 | 2019 |
| Evaluation and validation of assembling corrected PacBio long reads for microbial genome completion via hybrid approaches HH Lin, YC Liao PLoS One 10 (12), e0144305, 2015 | 33 | 2015 |
| Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child I Mashima, YC Liao, H Miyakawa, CF Theodorea, B Thawboon, ... International Journal of Systematic and Evolutionary Microbiology 68 (4 …, 2018 | 31 | 2018 |
| nanoMLST: accurate multilocus sequence typing using Oxford Nanopore Technologies MinION with a dual-barcode approach to multiplex large numbers of samples CH Liou, HC Wu, YC Liao, TL Yang Lauderdale, IW Huang, FJ Chen Microbial genomics 6 (3), e000336, 2020 | 30 | 2020 |
| Identification of cytotoxic T lymphocyte epitopes on swine viruses: multi-epitope design for universal T cell vaccine YC Liao, HH Lin, CH Lin, WB Chung PLoS One 8 (12), e84443, 2013 | 30 | 2013 |
| Genetic relationships among multidrug-resistant Salmonella enterica serovar Typhimurium strains from humans and animals YP Hong, YW Wang, IH Huang, YC Liao, HC Kuo, YY Liu, YH Tu, ... Antimicrobial agents and chemotherapy 62 (5), 10.1128/aac. 00213-18, 2018 | 25 | 2018 |
