| miR-600 acts as a bimodal switch that regulates breast cancer stem cell fate through WNT signaling R El Helou, G Pinna, O Cabaud, J Wicinski, R Bhajun, L Guyon, ... Cell reports 18 (9), 2256-2268, 2017 | 121 | 2017 |
| RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... Microbial Genomics 8 (5), 000833, 2022 | 74 | 2022 |
| A genome‐wide RNA i screen reveals essential therapeutic targets of breast cancer stem cells A Arfaoui, C Rioualen, V Azzoni, G Pinna, P Finetti, J Wicinski, E Josselin, ... EMBO Molecular Medicine 11 (10), e9930, 2019 | 26 | 2019 |
| Sequanix: a dynamic graphical interface for Snakemake workflows D Desvillechabrol, R Legendre, C Rioualen, C Bouchier, J Van Helden, ... Bioinformatics 34 (11), 1934-1936, 2018 | 21 | 2018 |
| RSAT:: Plants: motif discovery within clusters of upstream sequences in plant genomes B Contreras-Moreira, JA Castro-Mondragon, C Rioualen, ... Plant Synthetic Promoters: Methods and Protocols, 279-295, 2016 | 14 | 2016 |
| Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci … JM Tsagmo Ngoune, F Njiokou, B Loriod, G Kame-Ngasse, ... Frontiers in Immunology 8, 876, 2017 | 11 | 2017 |
| RegulonDB 11.0: comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. Microb Genom 8: mgen000833 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... | 9 | 2022 |
| Multi‐parametric cytometry from a complex cellular sample: Improvements and limits of manual versus computational‐based interactive analyses F Gondois‐Rey, S Granjeaud, P Rouillier, C Rioualen, G Bidaut, D Olive Cytometry Part A 89 (5), 480-490, 2016 | 9 | 2016 |
| HTS-Net: an integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings C Rioualen, Q Da Costa, B Chetrit, E Charafe-Jauffret, C Ginestier, ... PLoS One 12 (9), e0185400, 2017 | 7 | 2017 |
| RSAT:: Plants: Motif discovery in ChIP-Seq peaks of plant genomes JA Castro-Mondragon, C Rioualen, B Contreras-Moreira, J Van Helden Plant Synthetic Promoters: Methods and Protocols, 297-322, 2016 | 6 | 2016 |
| RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. Microb Genom. 2022; 8 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally | 5 | |
| Integrating Bacterial ChIP‐seq and RNA‐seq Data With SnakeChunks C Rioualen, L Charbonnier‐Khamvongsa, J Collado‐Vides, J van Helden Current protocols in bioinformatics 66 (1), e72, 2019 | 3 | 2019 |
| SnakeChunks: modular blocks to build Snakemake workflows for reproducible NGS analyses C Rioualen, L Charbonnier-Khamvongsa, J Helden bioRxiv, 165191, 2017 | 3 | 2017 |
| A Gold Standard for Transcription Factor Regulatory Interactions in Escherichia coli K-12: Architecture of Evidence Types P Lara, S Gama-Castro, H Salgado, C Rioualen, VH Tierrafría, ... bioRxiv, 2023.02. 25.530038, 2023 | 2 | 2023 |
| Orchestrating data flows throughout their whole life cycle K Bourhy, L Bouri, C Bruley, O Collin, F De Lamotte, T Denecker, ... JOBIM 2024-Journées ouvertes en biologie, informatique, et mathématiques 2024, 2024 | | 2024 |
| The EDAM Framework and Control Room C Rioualen, A Gaignard, M Kalaš, H Ménager Journées Ouvertes en Biologie Informatique et Mathématiques JOBIM 2024, 2024 | | 2024 |
| How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources B Batut, M Bernt, MH Ansari, M Kalaš, P Klemm, R Libouban, E Nasr, ... OSF, 2024 | | 2024 |
| Synergising ELIXIR resources for training in systems biology C Rioualen, F Bacall, C Furlan, M Kalaš, B Leskosek, H Ménager, ... OSF, 2024 | | 2024 |
| Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types P Lara, S Gama-Castro, H Salgado, C Rioualen, VH Tierrafría, ... Frontiers in Genetics 15, 1353553, 2024 | | 2024 |
| Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli P Lally, L Gómez-Romero, VH Tierrafría, P Aquino, C Rioualen, X Zhang, ... bioRxiv, 2024.05. 23.594371, 2024 | | 2024 |
