| Improved protein structure refinement guided by deep learning based accuracy estimation N Hiranuma, H Park, M Baek, I Anishchenko, J Dauparas, D Baker Nature communications 12 (1), 1340, 2021 | 219 | 2021 |
| DeepProfile: Deep learning of patient molecular profiles for precision medicine in acute myeloid leukemia A Dincer, S Celik, N Hiranuma, SI Lee BioRxiv, 278739, 2018 | 51 | 2018 |
| Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14 I Anishchenko, M Baek, H Park, N Hiranuma, DE Kim, J Dauparas, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1722-1733, 2021 | 46 | 2021 |
| Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana JA Koester, CT Berthiaume, N Hiranuma, MS Parker, V Iverson, ... Scientific Reports 8 (1), 10492, 2018 | 16 | 2018 |
| AIControl: replacing matched control experiments with machine learning improves ChIP-seq peak identification N Hiranuma, SM Lundberg, SI Lee Nucleic Acids Research 47 (10), e58-e58, 2019 | 12 | 2019 |
| DeepATAC: A deep-learning method to predict regulatory factor binding activity from ATAC-seq signals N Hiranuma, S Lundberg, SI Lee BioRxiv, 172767, 2017 | 12 | 2017 |
| DeepProfile: deep learning of cancer molecular profiles for precision medicine. bioRxiv: 278739 AB Dincer, S Celik, N Hiranuma, SI Lee | 9 | 2018 |
| Protein structure prediction guided by predicted inter-residue geometries I Anishchenko, M Baek, H Park, J Dauparas, N Hiranuma, S Mansoor, ... Fourteenth Meeting of Critical Assessment of Techniques for Protein …, 2020 | 7 | 2020 |
| CloudControl: Leveraging many public ChIP-seq control experiments to better remove background noise N Hiranuma, S Lundberg, SI Lee Proceedings of the 7th ACM international conference on bioinformatics …, 2016 | 5 | 2016 |
| The effect of communication on the evolution of cooperative behavior in a multi-agent system S Goings, EPM Johnston, N Hiranuma Proceedings of the Companion Publication of the 2014 Annual Conference on …, 2014 | 2 | 2014 |
| Protein Structure Accuracy Prediction with Deep Learning and Its Application to Structure Prediction and Design N Hiranuma University of Washington, 2022 | | 2022 |
| The Effect of Communication on the Evolution of Cooperative Behavior in a Multi-Agent System N Hiranuma, I Heinzman, J Cohn, S Goings | | |
