A single-cell atlas of in vivo mammalian chromatin accessibility DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324. e18, 2018 | 694 | 2018 |
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire RO Emerson, WS DeWitt, M Vignali, J Gravley, JK Hu, EJ Osborne, ... Nature genetics 49 (5), 659-665, 2017 | 455 | 2017 |
Dynamics of the cytotoxic T cell response to a model of acute viral infection WS DeWitt, RO Emerson, P Lindau, M Vignali, TM Snyder, C Desmarais, ... Journal of virology 89 (8), 4517-4526, 2015 | 157 | 2015 |
A public database of memory and naive B-cell receptor sequences WS DeWitt, P Lindau, TM Snyder, AM Sherwood, M Vignali, CS Carlson, ... PloS one 11 (8), e0160853, 2016 | 146 | 2016 |
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity W DeWitt, A Smith, G Schoch, J Hansen, F Matsen, P Bradley eLife, 2018 | 130 | 2018 |
Deep generative models for T cell receptor protein sequences K Davidsen, BJ Olson, WS DeWitt III, J Feng, E Harkins, P Bradley, ... Elife 8, e46935, 2019 | 69 | 2019 |
Using genotype abundance to improve phylogenetic inference WS DeWitt III, L Mesin, GD Victora, VN Minin, FA Matsen IV Molecular biology and evolution 35 (5), 1253-1265, 2018 | 61 | 2018 |
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19 Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ... Cell Reports 35 (8), 109173, 2021 | 44* | 2021 |
Increased mutation and gene conversion within human segmental duplications MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ... Nature 617 (7960), 325-334, 2023 | 42* | 2023 |
Nonparametric coalescent inference of mutation spectrum history and demography WS DeWitt, KD Harris, AP Ragsdale, K Harris Proceedings of the National Academy of Sciences 118 (21), e2013798118, 2021 | 38* | 2021 |
A diverse lipid antigen–specific TCR repertoire is clonally expanded during active tuberculosis WS DeWitt, KKQ Yu, DB Wilburn, A Sherwood, M Vignali, CL Day, ... The Journal of Immunology 201 (3), 888-896, 2018 | 35 | 2018 |
Imaging protein statistical substate occupancy in a spectrum-function phase space W DeWitt, K Chu Physical review letters 105 (9), 098101, 2010 | 30* | 2010 |
Estimation of cell lineage trees by maximum-likelihood phylogenetics J Feng, WS DEWITT III, A McKenna, N Simon, AD Willis, FA MATSEN IV The annals of applied statistics 15 (1), 343, 2021 | 29 | 2021 |
Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture WS Dewitt, RO Emerson, HS Robins, AM Sherwood US Patent 10,246,701, 2019 | 22 | 2019 |
Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation J Carlson, WS DeWitt, K Harris Current Opinion in Genetics & Development 62, 50-57, 2020 | 21 | 2020 |
A biophysical model of viral escape from polyclonal antibodies TC Yu, ZT Thornton, WW Hannon, WS DeWitt, CE Radford, FA Matsen IV, ... Virus Evolution 8 (2), veac110, 2022 | 19 | 2022 |
Methods for diagnosing infectious disease and determining HLA status using immune repertoire sequencing RO Emerson, HS Robins, M Rieder, W Dewitt III, C Carlson US Patent 11,047,008, 2021 | 19 | 2021 |
A single-cell atlas of DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324, 2018 | 16 | 2018 |
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra WS DeWitt, L Zhu, MR Vollger, ME Goldberg, A Talenti, AC Beichman, ... Journal of Open Source Software 8 (85), 5227, 2023 | 5 | 2023 |
Replicate immunosequencing as a robust probe of B cell repertoire diversity W DeWitt, P Lindau, T Snyder, M Vignali, R Emerson, H Robins arXiv preprint arXiv:1410.0350, 2014 | 4 | 2014 |