Knowledge-guided data mining on the standardized architecture of NRPS: Subtypes, novel motifs, and sequence entanglements R He, J Zhang, Y Shao, S Gu, C Song, L Qian, WB Yin, Z Li PLOS Computational Biology 19 (5), e1011100, 2023 | 10 | 2023 |
SIDERITE: Unveiling hidden siderophore diversity in the chemical space through digital exploration R He, S Gu, J Xu, X Li, H Chen, Z Shao, F Wang, J Shao, WB Yin, L Qian, ... iMeta, e192, 2024 | 3 | 2024 |
From sequence to ecology: siderophore-receptor coevolution algorithm predicts bacterial interactions in complex communities S Gu, Z Shao, Y Shao, S Zhu, D Zhang, R Allen, R He, J Shao, G Xiong, ... | 3* | 2023 |
From sequence to molecules: Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways S Gu, Y Shao, K Rehm, L Bigler, D Zhang, R He, R Xu, J Shao, A Jousset, ... bioRxiv, 2023.10. 30.564663, 2023 | 3 | 2023 |
Biosynthetic diversification of peptaibol mediates fungus-mycohost interactions J Fan, J Ren, R He, PL Wei, Y Li, W Li, D Chen, IS Druzhinina, Z Li, ... bioRxiv, 2022.06. 05.494846, 2022 | 1 | 2022 |
Natural diversifying evolution of nonribosomal peptide synthetases in a defensive symbiont reveals nonmodular functional constraints Z Li, LP Ióca, R He, MS Donia PNAS nexus 3 (9), pgae384, 2024 | | 2024 |
Forging the Iron-Net: Towards a Quantitative Understanding of Microbial Communities via Siderophore-Mediated Interactions S Gu, R He, G Xiong, Z Qu, Y Shao, L Yu, D Zhang, F Wang, R Xu, P Guo, ... Preprints, 2024 | | 2024 |