T follicular helper cell-germinal center B cell interaction strength regulates entry into plasma cell or recycling germinal center cell fate W Ise, K Fujii, K Shiroguchi, A Ito, K Kometani, K Takeda, E Kawakami, ... Immunity 48 (4), 702-715. e4, 2018 | 314 | 2018 |
Molecular basis for pseudokinase-dependent autoinhibition of JAK2 tyrosine kinase Y Shan, K Gnanasambandan, D Ungureanu, ET Kim, H Hammarén, ... Nature structural & molecular biology 21 (7), 579-584, 2014 | 160 | 2014 |
Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA K Masuda, B Ripley, KK Nyati, PK Dubey, MMU Zaman, H Hanieh, M Higa, ... Journal of Experimental Medicine 213 (4), 605-619, 2016 | 97 | 2016 |
Exit from germinal center to become quiescent memory B cells depends on metabolic reprograming and provision of a survival signal T Inoue, R Shinnakasu, C Kawai, W Ise, E Kawakami, N Sax, T Oki, ... Journal of Experimental Medicine 218 (1), e20200866, 2020 | 74 | 2020 |
Quantifying sequence and structural features of protein–RNA interactions S Li, K Yamashita, KM Amada, DM Standley Nucleic acids research 42 (15), 10086-10098, 2014 | 74 | 2014 |
Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling Y Enokizono, H Kumeta, K Funami, M Horiuchi, J Sarmiento, K Yamashita, ... Proceedings of the National Academy of Sciences 110 (49), 19908-19913, 2013 | 74 | 2013 |
Repertoire Builder: high-throughput structural modeling of B and T cell receptors D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... Molecular Systems Design & Engineering 4 (4), 761-768, 2019 | 69 | 2019 |
PD-1 blockade therapy promotes infiltration of tumor-attacking exhausted T cell clonotypes J Nagasaki, T Inozume, N Sax, R Ariyasu, M Ishikawa, K Yamashita, ... Cell reports 38 (5), 2022 | 65 | 2022 |
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies K Yamashita, K Ikeda, K Amada, S Liang, Y Tsuchiya, H Nakamura, ... Bioinformatics 30 (22), 3279-3280, 2014 | 63 | 2014 |
High‐resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations H Shirai, K Ikeda, K Yamashita, Y Tsuchiya, J Sarmiento, S Liang, ... Proteins: Structure, Function, and Bioinformatics 82 (8), 1624-1635, 2014 | 57 | 2014 |
Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions M Yokogawa, T Tsushima, NN Noda, H Kumeta, Y Enokizono, ... Scientific reports 6 (1), 22324, 2016 | 56 | 2016 |
Allergic conversion of protective mucosal immunity against nasal bacteria in patients with chronic rhinosinusitis with nasal polyposis K Takeda, S Sakakibara, K Yamashita, D Motooka, S Nakamura, ... Journal of Allergy and Clinical Immunology 143 (3), 1163-1175. e15, 2019 | 55 | 2019 |
HLA class I analysis provides insight into the genetic and epigenetic background of immune evasion in colorectal cancer with high microsatellite instability M Kawazu, T Ueno, K Saeki, N Sax, Y Togashi, T Kanaseki, K Chida, ... Gastroenterology 162 (3), 799-812, 2022 | 42 | 2022 |
Distinct immune cell dynamics correlate with the immunogenicity and reactogenicity of SARS-CoV-2 mRNA vaccine T Takano, M Morikawa, Y Adachi, K Kabasawa, N Sax, S Moriyama, ... Cell Reports Medicine 3 (5), 2022 | 33 | 2022 |
Hepatocyte factor JMJD5 regulates hepatitis B virus replication through interaction with HBx T Kouwaki, T Okamoto, A Ito, Y Sugiyama, K Yamashita, T Suzuki, ... Journal of virology 90 (7), 3530-3542, 2016 | 33 | 2016 |
Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus S Sakakibara, T Arimori, K Yamashita, H Jinzai, D Motooka, S Nakamura, ... Scientific Reports 7 (1), 16428, 2017 | 31 | 2017 |
RabGDIα is a negative regulator of interferon-γ–inducible GTPase-dependent cell-autonomous immunity to Toxoplasma gondii J Ohshima, M Sasai, J Liu, K Yamashita, JS Ma, Y Lee, H Bando, ... Proceedings of the National Academy of Sciences 112 (33), E4581-E4590, 2015 | 29 | 2015 |
Design of a protein tag and fluorogenic probe with modular structure for live-cell imaging of intracellular proteins Y Kamikawa, Y Hori, K Yamashita, L Jin, S Hirayama, DM Standley, ... Chemical Science 7 (1), 308-314, 2016 | 28 | 2016 |
Identification of conserved SARS-CoV-2 spike epitopes that expand public cTfh clonotypes in mild COVID-19 patients X Lu, Y Hosono, M Nagae, S Ishizuka, E Ishikawa, D Motooka, Y Ozaki, ... Journal of Experimental Medicine 218 (12), e20211327, 2021 | 25 | 2021 |
Antibody feedback contributes to facilitating the development of Omicron-reactive memory B cells in SARS-CoV-2 mRNA vaccinees T Inoue, R Shinnakasu, C Kawai, H Yamamoto, S Sakakibara, C Ono, ... Journal of Experimental Medicine 220 (2), e20221786, 2022 | 23 | 2022 |