Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins C Dong, GF Hao, HL Hua, S Liu, AA Labena, G Chai, J Huang, N Rao, ... Nucleic acids research 46 (D1), D393-D398, 2018 | 78 | 2018 |
Accurate prediction of human essential genes using only nucleotide composition and association information FB Guo, C Dong, HL Hua, S Liu, H Luo, HW Zhang, YT Jin, KY Zhang Bioinformatics 33 (12), 1758-1764, 2017 | 63 | 2017 |
Vgas: a viral genome annotation system KY Zhang, YZ Gao, MZ Du, S Liu, C Dong, FB Guo Frontiers in microbiology 10, 184, 2019 | 54 | 2019 |
Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment C Dong, YT Jin, HL Hua, QF Wen, S Luo, WX Zheng, FB Guo Briefings in bioinformatics 21 (1), 171-181, 2020 | 41 | 2020 |
Geptop 2.0: an updated, more precise, and faster Geptop server for identification of prokaryotic essential genes QF Wen, C Dong, S Liu, YZ Gao, HX Guo, FB Guo Frontiers in Microbiology 10, 1236, 2019 | 38 | 2019 |
An approach for predicting essential genes using multiple homology mapping and machine learning algorithms HL Hua, FZ Zhang, AA Labena, C Dong, YT Jin, FB Guo BioMed research international 2016 (1), 7639397, 2016 | 24 | 2016 |
Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots C Dong, YZ Yuan, FZ Zhang, HL Hua, YN Ye, AA Labena, H Lin, W Chen, ... Molecular BioSystems 12 (9), 2893-2900, 2016 | 22 | 2016 |
Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection Y Huang, J Chen, C Dong, D Sosa, S Xia, Y Ouyang, C Fan, D Li, ... The Plant Cell 34 (2), 802-817, 2022 | 20 | 2022 |
Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands FB Guo, L Xiong, KY Zhang, C Dong, FZ Zhang, PCY Woo BMC microbiology 17, 1-10, 2017 | 19 | 2017 |
Anti-CRISPRdb v2. 2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins C Dong, X Wang, C Ma, Z Zeng, DK Pu, S Liu, CS Wu, S Chen, Z Deng, ... Database 2022, baac010, 2022 | 16 | 2022 |
Metabolic pathway databases and model repositories AA Labena, YZ Gao, C Dong, H Hua, FB Guo Quantitative Biology 6 (1), 30-39, 2018 | 15 | 2018 |
IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models C Ye, N Xu, C Dong, Y Ye, X Zou, X Chen, F Guo, L Liu Scientific Reports 7 (1), 727, 2017 | 12 | 2017 |
A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network YN Ye, BG Ma, C Dong, H Zhang, LL Chen, FB Guo Scientific Reports 6 (1), 35082, 2016 | 11 | 2016 |
Prediction of protein-coding small ORFs in multi-species using integrated sequence-derived features and the random forest model J Yu, W Jiang, SB Zhu, Z Liao, X Dou, J Liu, FB Guo, C Dong Methods 210, 10-19, 2023 | 7 | 2023 |
Precise detection of Acrs in prokaryotes using only six features C Dong, DK Pu, C Ma, X Wang, QF Wen, Z Zeng, FB Guo bioRxiv, 2020.05. 23.112011, 2020 | 5 | 2020 |
CasLocusAnno: a web‐based server for annotating cas loci and their corresponding (sub)types C Dong, Z Zeng, DK Pu, QF Wen, S Liu, MZ Du, Y Sun, YZ Gao, N Rao, ... FEBS letters 593 (18), 2646-2654, 2019 | 5 | 2019 |
Insights into azalomycin F assembly-line contribute to evolution-guided polyketide synthase engineering and identification of intermodular recognition G Zhai, Y Zhu, G Sun, F Zhou, Y Sun, Z Hong, C Dong, PF Leadlay, ... Nature Communications 14 (1), 612, 2023 | 3 | 2023 |
Comprehensive exploration of the enzymes catalysing oxygen‐involved reactions and COGs relevant to bacterial oxygen utilization S Liu, MZ Du, QF Wen, J Kang, C Dong, L Xiong, J Huang, FB Guo Environmental microbiology 20 (10), 3836-3850, 2018 | 3 | 2018 |
SSER: Species specific essential reactions database AA Labena, YN Ye, C Dong, FZ Zhang, FB Guo BMC Systems Biology 11, 1-8, 2017 | 3 | 2017 |
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection J Chen, P Landback, D Arsala, A Guzzetta, S Xia, J Atlas, D Sosa, ... biorxiv, 2023 | 1 | 2023 |