iPTMnet: an integrated resource for protein post-translational modification network discovery H Huang, CN Arighi, KE Ross, J Ren, G Li, SC Chen, Q Wang, J Cowart, ... Nucleic acids research 46 (D1), D542-D550, 2018 | 126 | 2018 |
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ... Nucleic acids research 45 (D1), D339-D346, 2017 | 100 | 2017 |
Protein Ontology: a controlled structured network of protein entities DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ... Nucleic acids research 42 (D1), D415-D421, 2014 | 89 | 2014 |
Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the … Z Fereshteh, SA Schmidt, AA Al-Dossary, M Accerbi, C Arighi, J Cowart, ... Scientific Reports 8 (1), 16094, 2018 | 48 | 2018 |
Alterations in the global proteome and phosphoproteome in third generation EGFR TKI resistance reveal drug targets to circumvent resistance X Zhang, TK Maity, KE Ross, Y Qi, CM Cultraro, M Bahta, S Pitts, ... Cancer research 81 (11), 3051-3066, 2021 | 41 | 2021 |
Tunable synthetic extracellular matrices to investigate breast cancer response to biophysical and biochemical cues LA Sawicki, EM Ovadia, L Pradhan, JE Cowart, KE Ross, CH Wu, ... APL bioengineering 3 (1), 2019 | 35 | 2019 |
COVID-19 knowledge graph from semantic integration of biomedical literature and databases C Chen, KE Ross, S Gavali, JE Cowart, CH Wu Bioinformatics 37 (23), 4597-4598, 2021 | 30 | 2021 |
Understanding ER+ breast cancer dormancy using bioinspired synthetic matrices for long‐term 3D culture and insights into late recurrence EM Ovadia, L Pradhan, LA Sawicki, JE Cowart, RE Huber, SW Polson, ... Advanced biosystems 4 (9), 2000119, 2020 | 30 | 2020 |
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature J Ren, G Li, K Ross, C Arighi, P McGarvey, S Rao, J Cowart, S Madhavan, ... Database 2018, bay128, 2018 | 23 | 2018 |
Protein ontology on the semantic web for knowledge discovery C Chen, H Huang, KE Ross, JE Cowart, CN Arighi, CH Wu, DA Natale Scientific data 7 (1), 337, 2020 | 19 | 2020 |
A knowledge graph representation learning approach to predict novel kinase–substrate interactions S Gavali, K Ross, C Chen, J Cowart, CH Wu Molecular omics 18 (9), 853-864, 2022 | 4 | 2022 |
Knowledge Representation of Protein PTMs and Complexes in the Protein Ontology: Application to Multi-Faceted Disease Analysis. K Ross, CO Tudor, G Li, R Ding, I Çelen, J Cowart, CN Arighi, DA Natale, ... ICBO, 43-46, 2014 | 2 | 2014 |
Understanding the factors related to the opioid epidemic using machine learning S Gavali, C Chen, J Cowart, X Peng, S Ding, C Wu, T Anderson 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 1 | 2021 |
Understanding the factors driving the opioid epidemic using machine learning S Gavali, C Chen, J Cowart, X Peng, S Ding, C Wu, T Anderson arXiv preprint arXiv:2108.07301, 2021 | 1 | 2021 |
Global proteome and phosphoproteome alterations in third generation EGFR TKI resistance reveal drug targets to circumvent resistance X Zhang, TK Maity, KE Ross, Y Qi, CM Cultraro, S Gao, KD Nguyen, ... bioRxiv, 2020.07. 04.187617, 2020 | 1 | 2020 |
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery S Gavali, J Cowart, C Chen, KE Ross, C Arighi, CH Wu Database 2020, baz157, 2020 | 1 | 2020 |
KSFinder—a knowledge graph model for link prediction of novel phosphorylated substrates of kinases M Anandakrishnan, KE Ross, C Chen, V Shanker, J Cowart, CH Wu PeerJ 11, e16164, 2023 | | 2023 |
Socio-demographic-economic status is a significant predictor of covid-19 related hospitalizations in children and young adults: population level analysis based on US National … S Srivastava, C Prospero, R Zhang, J Hossain, S McCahan, J Cowart, ... Journal of the American College of Cardiology 81 (8_Supplement), 1552-1552, 2023 | | 2023 |
eMIND: Enabling automatic collection of protein variation impacts in Alzheimer's disease from the literature S Gupta, X Qin, Q Wang, J Cowart, H Huang, CH Wu, K Vijay-Shanker, ... bioRxiv, 2023.09. 07.556602, 2023 | | 2023 |
iPTMnet RESTful API for post-translational modification network analysis S Gavali, KE Ross, J Cowart, C Chen, CH Wu Computational Methods for Predicting Post-Translational Modification Sites …, 2022 | | 2022 |