Integration of spatial and single-cell transcriptomics localizes epithelial cell–immune cross-talk in kidney injury RM Ferreira, AR Sabo, S Winfree, KS Collins, D Janosevic, ... JCI insight 6 (12), 2021 | 105 | 2021 |
Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline MJ Ferkowicz, S Winfree, AR Sabo, MM Kamocka, S Khochare, ... Laboratory investigation 101 (5), 661-676, 2021 | 21 | 2021 |
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease VH Canela, WS Bowen, RM Ferreira, F Syed, JE Lingeman, AR Sabo, ... Nature Communications 14 (1), 4140, 2023 | 16 | 2023 |
Evolving concepts in uromodulin biology, physiology, and its role in disease: a tale of two forms KA LaFavers, R Micanovic, AR Sabo, LA Maghak, TM El-Achkar Hypertension 79 (11), 2409-2418, 2022 | 13 | 2022 |
The kidney releases a nonpolymerizing form of uromodulin in the urine and circulation that retains the external hydrophobic patch domain R Micanovic, KA LaFavers, KR Patidar, MS Ghabril, EH Doud, AL Mosley, ... American Journal of Physiology-Renal Physiology 322 (4), F403-F418, 2022 | 13 | 2022 |
Integrated cytometry with machine learning applied to high-content imaging of human kidney tissue for in situ cell classification and neighborhood analysis S Winfree, AT McNutt, S Khochare, TJ Borgard, D Barwinska, AR Sabo, ... Laboratory Investigation 103 (6), 100104, 2023 | 11 | 2023 |
Integration of spatial and single-cell transcriptomics localizes epithelial cell-immune cross-talk in kidney injury. JCI Insight 6 (12) R Melo Ferreira, AR Sabo, S Winfree, KS Collins, D Janosevic, ... | 10 | 2021 |
The chromatin landscape of healthy and injured cell types in the human kidney DL Gisch, M Brennan, BB Lake, J Basta, MS Keller, R Melo Ferreira, ... Nature communications 15 (1), 433, 2024 | 7 | 2024 |
Kidney Precision Medicine Project MJ Ferkowicz, S Winfree, AR Sabo, MM Kamocka, S Khochare, ... Large-scale, three-dimensional tissue cytometry of the human kidney: a …, 2021 | 6 | 2021 |
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury and matrix remodeling in patients with stone disease VH Canela, WS Bowen, RM Ferreira, JE Lingeman, AR Sabo, ... bioRxiv, 2022.06. 22.497218, 2022 | 2 | 2022 |
Label‐free imaging of non‐deparaffinized sections of the human kidney to determine tissue quality and signatures of disease AR Sabo, S Winfree, SB Bledsoe, CL Phillips, JE Lingeman, MT Eadon, ... Physiological Reports 10 (3), e15167, 2022 | 2 | 2022 |
Integration of spatial transcriptomic and single cell sequencing identifies expression patterns underlying immune and epithelial cell cross-talk in acute kidney injury RM Ferreira, AR Sabo, S Winfree, KS Collins, D Janosevic, C Gulbronson, ... bioRxiv, 2021.01. 19.427258, 2021 | 2 | 2021 |
Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project TM El-Achkar, MT Eadon, M Kretzler, J Himmelfarb, B Lake, K Zhang, ... American Journal of Kidney Diseases 83 (3), 402-410, 2024 | 1 | 2024 |
Defining protein expression in the kidney at large scale: from antibody validation to cytometry analysis AR Sabo, S Winfree, TM El-Achkar American Journal of Physiology-Renal Physiology 324 (2), F135-F137, 2023 | 1 | 2023 |
Integration of CODEX and Brightfield Histology for Cell Type Segmentation and Classification Using Deep Learning: FR-PO029 N Lucarelli, S Winfree, AR Sabo, S Border, D Barwinska, ZG Laszik, ... Journal of the American Society of Nephrology 34 (11S), 412-413, 2023 | | 2023 |
Spatially Localized Mesangial Cell Communication in Diabetic Kidney Disease: FR-OR32 RM Ferreira, CL Phillips, M Asghari, DL Gisch, D Barwinska, ... Journal of the American Society of Nephrology 34 (11S), 37, 2023 | | 2023 |
Myeloid Cell Deletion of the Cationic Channel TRPM2, a Target of Uromodulin Inhibition, Is Protective in Murine Sepsis: SA-PO183 KA LaFavers, AR Sabo, G Rhodes, TM El-Achkar Journal of the American Society of Nephrology 34 (11S), 773, 2023 | | 2023 |
Diverse Immune, Stromal, and Vascular Niches Along the Cortico-Medullary Axis of the Human Kidneys by Integrating 10 Different Modalities Performed on the Same Tissue Block: FR … S Winfree, B Lake, RM Ferreira, AA Fung, AR Sabo, M Kaushal, ... Journal of the American Society of Nephrology 34 (11S), 410, 2023 | | 2023 |
MP05-20 KIDNEY STONE GROWTH ‘RINGS’VISUALIZED USING MICRO CT AND FLUORESCENCE MICROSCOPY: SIMILARITIES IN GROWTH OF RANDALL’S PLAQUE CALCIUM OXALATE STONES FROM THE SAME KIDNEYS E Wachter, A Sabo, T El-Achkar, E Worcester, J Lingeman, J Williams The Journal of Urology 209 (Supplement 4), e52, 2023 | | 2023 |
Indiana University adapted Akoya Phenocycler-Fusion Tissue Staining and Imaging Protocol for Fresh Frozen Kidney Samples AR Sabo, CJ Gulbronson, D Barwinska, MJ Ferkowicz, W Bowen, ... | | 2023 |