| Competitive and cooperative metabolic interactions in bacterial communities S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... Nature communications 2 (1), 589, 2011 | 538 | 2011 |
| Harnessing the landscape of microbial culture media to predict new organism–media pairings MA Oberhardt, R Zarecki, S Gronow, E Lang, HP Klenk, U Gophna, ... Nature communications 6 (1), 8493, 2015 | 163 | 2015 |
| Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions X Xu, R Zarecki, S Medina, S Ofaim, X Liu, C Chen, S Hu, D Brom, D Gat, ... The ISME journal 13 (2), 494-508, 2019 | 151 | 2019 |
| Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice Y Li, R Tinoco, L Elmén, I Segota, Y Xian, Y Fujita, A Sahu, R Zarecki, ... Nature communications 10 (1), 1492, 2019 | 143 | 2019 |
| Prebiotic-induced anti-tumor immunity attenuates tumor growth Y Li, L Elmén, I Segota, Y Xian, R Tinoco, Y Feng, Y Fujita, RRS Muñoz, ... Cell reports 30 (6), 1753-1766. e6, 2020 | 130 | 2020 |
| Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm SMD Seaver, LMT Bradbury, O Frelin, R Zarecki, E Ruppin, AD Hanson, ... Frontiers in plant science 6, 142, 2015 | 61 | 2015 |
| Diet‐induced changes of redox potential underlie compositional shifts in the rumen archaeal community N Friedman, E Shriker, B Gold, T Durman, R Zarecki, E Ruppin, I Mizrahi Environmental Microbiology 19 (1), 174-184, 2017 | 56 | 2017 |
| Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations O Eilam, R Zarecki, M Oberhardt, LK Ursell, M Kupiec, R Knight, ... MBio 5 (4), 10.1128/mbio. 01526-14, 2014 | 52 | 2014 |
| Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun 2: 589 S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... | 39 | 2011 |
| A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness R Zarecki, MA Oberhardt, L Reshef, U Gophna, E Ruppin PLoS computational biology 10 (7), e1003726, 2014 | 37 | 2014 |
| Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli MA Oberhardt, R Zarecki, L Reshef, F Xia, M Duran-Frigola, R Schreiber, ... PLoS computational biology 12 (1), e1004705, 2016 | 33 | 2016 |
| Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation S Ofaim, R Zarecki, S Porob, D Gat, T Lahav, Y Kashi, R Aly, H Eizenberg, ... Scientific reports 10 (1), 13019, 2020 | 28 | 2020 |
| Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious A Wagner, R Zarecki, L Reshef, C Gochev, R Sorek, U Gophna, E Ruppin Proceedings of the National Academy of Sciences 110 (47), 19166-19171, 2013 | 26 | 2013 |
| Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms R Zarecki, MA Oberhardt, K Yizhak, A Wagner, E Shtifman Segal, ... PloS one 9 (5), e98372, 2014 | 13 | 2014 |
| Strategies for Enhancing in vitro Degradation of Linuron by Variovorax sp. Strain SRS 16 Under the Guidance of Metabolic Modeling K Dhakar, R Zarecki, D Van Bommel, N Knossow, S Medina, B Öztürk, ... Frontiers in Bioengineering and Biotechnology 9, 602464, 2021 | 10 | 2021 |
| Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun. 2011; 2: 589 S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... | 9 | |
| ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction JP Faria, F Liu, JN Edirisinghe, N Gupta, SMD Seaver, AP Freiburger, ... bioRxiv, 2023.10. 04.556561, 2023 | 5 | 2023 |
| Comparative study of bacterial community dynamics in different soils following application of the herbicide atrazine K Dhakar, S Medina, H Ziadna, K Igbaria, G Achdari, R Lati, R Zarecki, ... Environmental Research 220, 115189, 2023 | 4 | 2023 |
| Modeling-guided amendments lead to enhanced biodegradation in soil K Dhakar, R Zarecki, S Medina, H Ziadna, K Igbaria, R Lati, Z Ronen, ... Msystems 7 (4), e00169-22, 2022 | 4 | 2022 |
| Microbial degradation of herbicides in contaminated soils by following computational approaches K Dhakar, H Eizenberg, Z Ronen, R Zarecki, S Freilich Bioinformatics in Agriculture, 399-417, 2022 | 3 | 2022 |
