| Optimising droplet digital PCR analysis approaches for detection and quantification of bacteria: a case study of fire blight and potato brown rot T Dreo, M Pirc, Ž Ramšak, J Pavšič, M Milavec, J Žel, K Gruden Analytical and bioanalytical chemistry 406, 6513-6528, 2014 | 164 | 2014 |
| GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology Ž Ramšak, Š Baebler, A Rotter, M Korbar, I Mozetič, B Usadel, K Gruden Nucleic Acids Research 42 (D1), D1167-D1175, 2014 | 111 | 2014 |
| Enabling reusability of plant phenomic datasets with MIAPPE 1.1 EA Papoutsoglou, D Faria, D Arend, E Arnaud, IN Athanasiadis, I Chaves, ... New Phytologist 227 (1), 260-273, 2020 | 110 | 2020 |
| Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish (Danio rerio) two-generation study R Kovacs, Z Csenki, K Bakos, B Urbanyi, Á Horváth, V Garaj-Vrhovac, ... Water research 77, 201-212, 2015 | 110 | 2015 |
| Heterogeneous glioblastoma cell cross-talk promotes phenotype alterations and enhanced drug resistance H Motaln, A Koren, K Gruden, Ž Ramšak, C Schichor, TT Lah Oncotarget 6 (38), 40998, 2015 | 71 | 2015 |
| System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress … L Wang, T Nägele, H Doerfler, L Fragner, P Chaturvedi, E Nukarinen, ... The Plant Journal 87 (3), 318-332, 2016 | 66 | 2016 |
| Physiological and proteomic signatures reveal mechanisms of superior drought resilience in pearl millet compared to wheat A Ghatak, P Chaturvedi, G Bachmann, L Valledor, Ž Ramšak, ... Frontiers in Plant Science 11, 600278, 2021 | 61 | 2021 |
| Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction T Stare, Ž Ramšak, A Blejec, K Stare, N Turnšek, W Weckwerth, ... BMC genomics 16, 1-17, 2015 | 54 | 2015 |
| Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection M Križnik, M Petek, D Dobnik, Ž Ramšak, Š Baebler, S Pollmann, ... Frontiers in plant science 8, 2192, 2017 | 46 | 2017 |
| Network modeling unravels mechanisms of crosstalk between ethylene and salicylate signaling in potato Ž Ram¡ ak, A Coll, T Stare, O Tzfadia, Š Baebler, Y Van de Peer, ... Plant physiology 178 (1), 488-499, 2018 | 43 | 2018 |
| Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato M Petek, M Zagorščak, Ž Ramšak, S Sanders, Š Tomaž, E Tseng, ... Scientific data 7 (1), 249, 2020 | 37 | 2020 |
| PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases T Liu, P Salguero, M Petek, C Martinez-Mira, L Balzano-Nogueira, ... Nucleic Acids Research 50 (W1), W551-W559, 2022 | 36 | 2022 |
| Direct regulation of shikimate, early phenylpropanoid, and stilbenoid pathways by Subgroup 2 R2R3‐MYBs in grapevine L Orduña, M Li, D Navarro‐Payá, C Zhang, A Santiago, P Romero, ... The Plant Journal 110 (2), 529-547, 2022 | 29 | 2022 |
| Multiomics analysis of tolerant interaction of potato with potato virus Y T Stare, Ž Ramšak, M Križnik, K Gruden Scientific data 6 (1), 250, 2019 | 19 | 2019 |
| Differential Response of Grapevine to Infection with ‘Candidatus Phytoplasma solani’ in Early and Late Growing Season through Complex Regulation of mRNA … M Dermastia, B Škrlj, R Strah, B Anžič, Š Tomaž, M Križnik, C Schönhuber, ... International journal of molecular sciences 22 (7), 3531, 2021 | 15 | 2021 |
| Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni L Foix, A Nadal, M Zagorščak, Ž Ramšak, A Esteve-Codina, K Gruden, ... BMC genomics 22 (1), 360, 2021 | 12 | 2021 |
| Interactive exploration of heterogeneous biological networks with Biomine Explorer V Podpečan, Ž Ramšak, K Gruden, H Toivonen, N Lavrač Bioinformatics 35 (24), 5385-5388, 2019 | 12 | 2019 |
| DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R M Zagorščak, A Blejec, Ž Ramšak, M Petek, T Stare, K Gruden Plant Methods 14, 1-9, 2018 | 9 | 2018 |
| Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine L Orduña, M Li, D Navarro-Payá, C Zhang, A Santiago, P Romero, ... bioRxiv, 2020.12. 31.424746, 2021 | 7* | 2021 |
| New Cross-Talks between Pathways Involved in Grapevine Infection with ‘Candidatus Phytoplasma solani’ Revealed by Temporal Network Modelling B Škrlj, MP Novak, G Brader, B Anžič, Ž Ramšak, K Gruden, J Kralj, ... Plants 10 (4), 646, 2021 | 4 | 2021 |
