A microfluidics platform for combinatorial drug screening on cancer biopsies F Eduati, R Utharala, D Madhavan, UP Neumann, T Longerich, T Cramer, ... Nature communications 9 (1), 2434, 2018 | 225 | 2018 |
Prediction of human population responses to toxic compounds by a collaborative competition F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ... Nature biotechnology 33 (9), 933-940, 2015 | 120 | 2015 |
Drug resistance mechanisms in colorectal cancer dissected with cell type–specific dynamic logic models F Eduati, V Doldàn-Martelli, B Klinger, T Cokelaer, A Sieber, F Kogera, ... Cancer research 77 (12), 3364-3375, 2017 | 104 | 2017 |
Exhaustively characterizing feasible logic models of a signaling network using answer set programming C Guziolowski, S Videla, F Eduati, S Thiele, T Cokelaer, A Siegel, ... Bioinformatics 29 (18), 2320-2326, 2013 | 93 | 2013 |
Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies F Eduati, P Jaaks, J Wappler, T Cramer, CA Merten, MJ Garnett, ... Molecular systems biology 16 (2), e8664, 2020 | 80 | 2020 |
Multi-omics profiling of the tumor microenvironment: paving the way to precision immuno-oncology F Finotello, F Eduati Frontiers in Oncology 8, 430, 2018 | 67 | 2018 |
Interpretable systems biomarkers predict response to immune-checkpoint inhibitors Ó Lapuente-Santana, M van Genderen, PAJ Hilbers, F Finotello, F Eduati Patterns 2 (8), 2021 | 62 | 2021 |
Integrating literature-constrained and data-driven inference of signalling networks F Eduati, J De Las Rivas, B Di Camillo, G Toffolo, J Saez-Rodriguez Bioinformatics 28 (18), 2311-2317, 2012 | 45 | 2012 |
Learning Boolean logic models of signaling networks with ASP S Videla, C Guziolowski, F Eduati, S Thiele, M Gebser, J Nicolas, ... Theoretical Computer Science 599, 79-101, 2015 | 43 | 2015 |
A rule-based model of insulin signalling pathway B Di Camillo, A Carlon, F Eduati, GM Toffolo BMC systems biology 10, 1-13, 2016 | 40 | 2016 |
Logic modeling in quantitative systems pharmacology P Traynard, L Tobalina, F Eduati, L Calzone, J Saez‐Rodriguez CPT: pharmacometrics & systems pharmacology 6 (8), 499-511, 2017 | 35 | 2017 |
Revisiting the training of logic models of protein signaling networks with ASP S Videla, C Guziolowski, F Eduati, S Thiele, N Grabe, J Saez-Rodriguez, ... Computational methods in systems biology: 10th international conference …, 2012 | 30 | 2012 |
DREAMTools: a Python package for scoring collaborative challenges T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ... F1000Research 4, 2015 | 28 | 2015 |
Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells B Di Camillo, F Eduati, SK Nair, A Avogaro, GM Toffolo BMC cell biology 15, 1-9, 2014 | 28 | 2014 |
A Boolean approach to linear prediction for signaling network modeling F Eduati, A Corradin, B Di Camillo, G Toffolo PloS one 5 (9), e12789, 2010 | 26 | 2010 |
Liquid biopsy-based decision support algorithms for diagnosis and subtyping of lung cancer E Visser, SAAM Genet, RPPA de Kock, BEEM van den Borne, ... Lung Cancer 178, 28-36, 2023 | 18 | 2023 |
Towards systems biomarkers of response to immune checkpoint blockers Ó Lapuente-Santana, F Eduati Frontiers in Oncology 10, 1027, 2020 | 16 | 2020 |
Correction of the NSE concentration in hemolyzed serum samples improves its diagnostic accuracy in small-cell lung cancer SAAM Genet, E Visser, BEEM van den Borne, M Youssef-El Soud, ... Oncotarget 11 (27), 2660, 2020 | 13 | 2020 |
Dynamic modeling of miRNA-mediated feed-forward loops F Eduati, B Di Camillo, M Karbiener, M Scheideler, D Corà, M Caselle, ... Journal of computational biology 19 (2), 188-199, 2012 | 11 | 2012 |
Up-front mutation detection in circulating tumor DNA by droplet digital PCR has added diagnostic value in lung cancer E Visser, R de Kock, S Genet, B van den Borne, M Youssef-El Soud, ... Translational Oncology 27, 101589, 2023 | 9 | 2023 |