Lineage specification of human dendritic cells is marked by IRF8 expression in hematopoietic stem cells and multipotent progenitors J Lee, YJ Zhou, W Ma, W Zhang, A Aljoufi, T Luh, K Lucero, D Liang, ... Nature immunology 18 (8), 877-888, 2017 | 135 | 2017 |
3D modeling of esophageal development using human PSC-derived basal progenitors reveals a critical role for notch signaling Y Zhang, Y Yang, M Jiang, SX Huang, W Zhang, D Al Alam, ... Cell stem cell 23 (4), 516-529. e5, 2018 | 86 | 2018 |
EdgeMarker: identifying differentially correlated molecule pairs as edge-biomarkers W Zhang, T Zeng, L Chen Journal of theoretical biology 362, 35-43, 2014 | 69 | 2014 |
Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells B Laffleur, J Lim, W Zhang, Y Chen, E Pefanis, J Bizarro, CR Batista, L Wu, ... Nature genetics 53 (2), 230-242, 2021 | 67 | 2021 |
Diagnosing phenotypes of single-sample individuals by edge biomarkers W Zhang, T Zeng, X Liu, L Chen Journal of molecular cell biology 7 (3), 231-241, 2015 | 67 | 2015 |
Nuclear proximity of Mtr4 to RNA exosome restricts DNA mutational asymmetry J Lim, PK Giri, D Kazadi, B Laffleur, W Zhang, V Grinstein, E Pefanis, ... Cell 169 (3), 523-537. e15, 2017 | 64 | 2017 |
Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals T Zeng, W Zhang, X Yu, X Liu, M Li, L Chen Briefings in bioinformatics 17 (4), 576-592, 2016 | 51 | 2016 |
Deciphering early development of complex diseases by progressive module network T Zeng, C Zhang, W Zhang, R Liu, J Liu, L Chen Methods 67 (3), 334-343, 2014 | 48 | 2014 |
Mechanism of noncoding RNA-associated N6-methyladenosine recognition by an RNA processing complex during IgH DNA recombination L Nair, W Zhang, B Laffleur, MK Jha, J Lim, H Lee, L Wu, NS Alvarez, ... Molecular cell 81 (19), 3949-3964. e7, 2021 | 38 | 2021 |
Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination G Rothschild, W Zhang, J Lim, PK Giri, B Laffleur, Y Chen, M Fang, ... Science immunology 5 (44), eaay5864, 2020 | 34 | 2020 |
Edge biomarkers for classification and prediction of phenotypes T Zeng, WW Zhang, XT Yu, XP Liu, MY Li, R Liu, LN Chen Science China Life Sciences 57, 1103-1114, 2014 | 34 | 2014 |
Discovering a critical transition state from nonalcoholic hepatosteatosis to nonalcoholic steatohepatitis by lipidomics and dynamical network biomarkers R Sa, W Zhang, J Ge, X Wei, Y Zhou, DR Landzberg, Z Wang, X Han, ... Journal of molecular cell biology 8 (3), 195-206, 2016 | 31 | 2016 |
Gaussian graphical model for identifying significantly responsive regulatory networks from time course high-throughput data ZP Liu, W Zhang, K Horimoto, L Chen Systems Biology, IET 7 (5), 143-152, 2013 | 20 | 2013 |
RNA exosome drives early B cell development via noncoding RNA processing mechanisms B Laffleur, CR Batista, W Zhang, J Lim, B Yang, D Rossille, L Wu, ... Science immunology 7 (72), eabn2738, 2022 | 18 | 2022 |
Specific regulation of BACH1 by the hotspot mutant p53R175H reveals a distinct gain-of-function mechanism Z Su, N Kon, J Yi, H Zhao, W Zhang, Q Tang, H Li, H Kobayashi, Z Li, ... Nature cancer 4 (4), 564-581, 2023 | 17 | 2023 |
MCentridFS: a tool for identifying module biomarkers for multi-phenotypes from high-throughput data Z Wen, W Zhang, T Zeng, L Chen Molecular BioSystems 10 (11), 2870-2875, 2014 | 13 | 2014 |
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells WKM Lai, L Mariani, G Rothschild, ER Smith, BJ Venters, TR Blanda, ... Genome research 31 (9), 1663-1679, 2021 | 12 | 2021 |
Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression RJ Leeman-Neill, D Song, J Bizarro, L Wacheul, G Rothschild, S Singh, ... Nature genetics 55 (12), 2160-2174, 2023 | 9 | 2023 |
Proteasomal regulation of mammalian SPT16 in controlling transcription A Kaja, A Adhikari, S Karmakar, W Zhang, G Rothschild, U Basu, SK Batra, ... Molecular and cellular biology 41 (4), e00452-20, 2021 | 7 | 2021 |
m6A RNA modification regulates innate lymphoid cell responses in a lineage-specific manner Y Zhang, W Zhang, J Zhao, T Ito, J Jin, AO Aparicio, J Zhou, V Guichard, ... Nature immunology 24 (8), 1256-1264, 2023 | 6 | 2023 |