| Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts M Gonçalves, A Pontes, P Almeida, R Barbosa, M Serra, D Libkind, ... Current Biology 26 (20), 2750-2761, 2016 | 225 | 2016 |
| Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication—The Case of Cachaca Yeasts R Barbosa, A Pontes, RO Santos, GG Montandon, ... Genome biology and evolution 10 (8), 1939-1955, 2018 | 49 | 2018 |
| Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome AM Yurkov, O Röhl, A Pontes, C Carvalho, C Maldonado, JP Sampaio FEMS yeast research 16 (1), fov103, 2016 | 49 | 2016 |
| Revisiting the taxonomic synonyms and populations of Saccharomyces cerevisiae—phylogeny, phenotypes, ecology and domestication A Pontes, M Hutzler, PH Brito, JP Sampaio Microorganisms 8 (6), 903, 2020 | 44 | 2020 |
| Yeast diversity associated with the phylloplane of corn plants cultivated in Thailand P Into, A Pontes, JP Sampaio, S Limtong Microorganisms 8 (1), 80, 2020 | 44 | 2020 |
| A quasi-domesticate relic hybrid population of Saccharomyces cerevisiae× S. paradoxus adapted to olive brine A Pontes, N Čadež, P Gonçalves, JP Sampaio Frontiers in Genetics 10, 447841, 2019 | 37 | 2019 |
| Rare and undersampled dimorphic basidiomycetes AV Kachalkin, B Turchetti, J Inácio, C Carvalho, T Mašínová, A Pontes, ... Mycological Progress 18, 945-971, 2019 | 29 | 2019 |
| A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast M Silva, A Pontes, R Franco‐Duarte, P Soares, JP Sampaio, MJ Sousa, ... Molecular Ecology 32 (10), 2396-2412, 2023 | 15 | 2023 |
| Cryolevonia gen. nov. and Cryolevonia schafbergensis sp. nov., a cryophilic yeast from ancient permafrost and melted sea ice A Pontes, J Ruethi, B Frey, A Aires, A Thomas, D Overy, B Halti, R Kerr, ... International journal of systematic and evolutionary microbiology 70 (4 …, 2020 | 15 | 2020 |
| Global distribution of IRC7 alleles in Saccharomyces cerevisiae populations: a genomic and phenotypic survey within the wine clade J Ruiz, M de Celis, M Martín‐Santamaría, I Benito‐Vázquez, A Pontes, ... Environmental Microbiology 23 (6), 3182-3195, 2021 | 13 | 2021 |
| Occultifur mephitis fa, sp. nov. and other yeast species from hypoxic and elevated CO2 mofette environments N Šibanc, P Zalar, HJ Schroers, J Zajc, A Pontes, JP Sampaio, I Maček International journal of systematic and evolutionary microbiology 68 (7 …, 2018 | 10 | 2018 |
| Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense fa sp. nov., isolated from temperate forest soils T Mašínová, A Pontes, C Carvalho, JP Sampaio, P Baldrian International journal of systematic and evolutionary microbiology 67 (4 …, 2017 | 10 | 2017 |
| Papiliotrema plantarum sp. nov., a novel tremellaceous sexual yeast species P Into, A Pontes, N Jacques, S Casaregola, S Limtong, JP Sampaio International journal of systematic and evolutionary microbiology 68 (6 …, 2018 | 9 | 2018 |
| Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov., isolated from Mediterranean forest soils A Pontes, O Röhl, C Carvalho, C Maldonado, AM Yurkov, ... International Journal of Systematic and Evolutionary Microbiology 66 (2 …, 2016 | 9 | 2016 |
| Brewing microbiology: current research, omics and microbial ecology. JP Sampaio, A Pontes, D Libkind, M Hutzler, NA Bokulich, CW Bamforth Caister Academic Press, Norfolk, UK, 2017 | 6 | 2017 |
| Do microbes evade domestication?-Evaluating potential ferality among diastatic Saccharomyces cerevisiae F Paraíso, A Pontes, J Neves, K Lebani, M Hutzler, N Zhou, JP Sampaio Food Microbiology 115, 104320, 2023 | 5 | 2023 |
| Cryptotrichosporon argae sp. nov., Cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils A Pontes, O Röhl, C Maldonado, AM Yurkov, JP Sampaio International journal of systematic and evolutionary microbiology 67 (9 …, 2017 | 3 | 2017 |
| Phaffia brasiliana sp. nov., a yeast species isolated from soil in a Cerrado–Atlantic Rain Forest ecotone site in Brazil ARO Santos, A Aires, A Pontes, M Silva, PH Brito, M Groenewald, ... International Journal of Systematic and Evolutionary Microbiology 71 (11 …, 2021 | 2 | 2021 |
| Extensive remodeling of sugar metabolism through gene loss and horizontal gene transfer in a eukaryotic lineage A Pontes, F Paraíso, M Silva, C Lagoas, A Aires, PH Brito, CA Rosa, ... BMC biology 22 (1), 128, 2024 | 1 | 2024 |
| Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication A Pontes, F Paraíso, YC Liu, S Limtong, S Jindamorakot, L Jespersen, ... Iscience 27 (2), 2024 | 1 | 2024 |
