| FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool J Brown, M Pirrung, LA McCue Bioinformatics 33 (19), 3137-3139, 2017 | 724 | 2017 |
| Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes LA McCue, W Thompson, CS Carmack, MP Ryan, JS Liu, V Derbyshire, ... Nucleic acids research 29 (3), 774-782, 2001 | 343 | 2001 |
| Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-Reducing Bacterium Shewanella oneidensis XF Wan, NC VerBerkmoes, LA McCue, D Stanek, H Connelly, LJ Hauser, ... Journal of bacteriology 186 (24), 8385-8400, 2004 | 165 | 2004 |
| Functional classification of cNMP-binding proteins and nucleotide cyclases with implications for novel regulatory pathways in Mycobacterium tuberculosis LA McCue, KA McDonough, CE Lawrence Genome research 10 (2), 204-219, 2000 | 165 | 2000 |
| Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a Cyclic AMP Receptor Protein-Like DNA Binding Protein G Bai, LA McCue, KA McDonough Journal of bacteriology 187 (22), 7795-7804, 2005 | 144 | 2005 |
| Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations E Kolker, AF Picone, MY Galperin, MF Romine, R Higdon, KS Makarova, ... Proceedings of the National Academy of Sciences 102 (6), 2099-2104, 2005 | 142 | 2005 |
| Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites ZS Qin, LA McCue, W Thompson, L Mayerhofer, CE Lawrence, JS Liu Nature biotechnology 21 (4), 435-439, 2003 | 139 | 2003 |
| Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis JF Challacombe, CN Hesse, LM Bramer, LA McCue, M Lipton, S Purvine, ... BMC genomics 20, 1-27, 2019 | 138 | 2019 |
| Factors influencing the identification of transcription factor binding sites by cross-species comparison LA McCue, W Thompson, CS Carmack, CE Lawrence Genome research 12 (10), 1523-1532, 2002 | 137 | 2002 |
| ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data S Kieser, J Brown, EM Zdobnov, M Trajkovski, LA McCue BMC bioinformatics 21, 1-8, 2020 | 136 | 2020 |
| Identification and characterization of mycobacterial proteins differentially expressed under standing and shaking culture conditions, including Rv2623 from a novel class of … MA Florczyk, LA McCue, RF Stack, CR Hauer, KA McDonough Infection and immunity 69 (9), 5777-5785, 2001 | 132 | 2001 |
| Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park MA Kozubal, M Romine, RM Jennings, ZJ Jay, SG Tringe, DB Rusch, ... The ISME journal 7 (3), 622-634, 2013 | 131 | 2013 |
| Linking microbial community structure to β-glucosidic function in soil aggregates VL Bailey, SJ Fansler, JC Stegen, LA McCue The ISME journal 7 (10), 2044-2053, 2013 | 125 | 2013 |
| Comparative systems biology across an evolutionary gradient within the Shewanella genus KT Konstantinidis, MH Serres, MF Romine, JLM Rodrigues, J Auchtung, ... Proceedings of the National Academy of Sciences 106 (37), 15909-15914, 2009 | 125 | 2009 |
| A Family of acr-Coregulated Mycobacterium tuberculosis Genes Shares a Common DNA Motif and Requires Rv3133c (dosR or devR) for Expression MA Florczyk, LA McCue, A Purkayastha, E Currenti, MJ Wolin, ... Infection and immunity 71 (9), 5332-5343, 2003 | 125 | 2003 |
| Identification of a novel class in the α/β hydrolase fold superfamily: the N‐myc differentiation‐related proteins E Shaw, LA McCue, CE Lawrence, JS Dordick Proteins: Structure, Function, and Bioinformatics 47 (2), 163-168, 2002 | 104 | 2002 |
| Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data BJM Webb-Robertson, LA McCue, KM Waters, MM Matzke, JM Jacobs, ... Journal of proteome research 9 (11), 5748-5756, 2010 | 101 | 2010 |
| Identification of a Mycobacterium tuberculosis Putative Classical Nitroreductase Gene Whose Expression Is Coregulated with That of the acr Gene within … A Purkayastha, LA McCue, KA McDonough Infection and Immunity 70 (3), 1518-1529, 2002 | 97 | 2002 |
| Identification, expression, and deduced primary structure of transketolase and other enzymes encoded within the form II CO2 fixation operon of Rhodobacter sphaeroides. JH Chen, JL Gibson, LA McCue, FR Tabita Journal of Biological Chemistry 266 (30), 20447-20452, 1991 | 91 | 1991 |
| The Gibbs centroid sampler WA Thompson, LA Newberg, S Conlan, LA McCue, CE Lawrence Nucleic acids research 35 (suppl_2), W232-W237, 2007 | 87 | 2007 |
