Concept annotation in the CRAFT corpus M Bada, M Eckert, D Evans, K Garcia, K Shipley, D Sitnikov, ... BMC bioinformatics 13, 1-20, 2012 | 300 | 2012 |
Cross-product extensions of the Gene Ontology CJ Mungall, M Bada, TZ Berardini, J Deegan, A Ireland, MA Harris, ... Journal of biomedical informatics 44 (1), 80-86, 2011 | 154 | 2011 |
A short study on the success of the Gene Ontology M Bada, R Stevens, C Goble, Y Gil, M Ashburner, JA Blake, JM Cherry, ... Journal of web semantics 1 (2), 235-240, 2004 | 146 | 2004 |
RiboWeb: An ontology-based system for collaborative molecular biology RB Altman, M Buda, XJ Chai, MW Carillo, RO Chen, NF Abernethy IEEE Intelligent Systems and Their Applications 14 (5), 68-76, 1999 | 132 | 1999 |
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ... BMC bioinformatics 15, 1-29, 2014 | 131 | 2014 |
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools KM Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ... BMC bioinformatics, 2011 | 127 | 2011 |
KaBOB: ontology-based semantic integration of biomedical databases KM Livingston, M Bada, WA Baumgartner, LE Hunter BMC bioinformatics 16, 1-21, 2015 | 87 | 2015 |
Computational modeling of structural experimental data MA Bada, RB Altman Methods in enzymology 317, 470-484, 2000 | 87 | 2000 |
Quality assurance of medical ontologies JE Rogers Methods of information in medicine 45 (03), 267-274, 2006 | 73 | 2006 |
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology DP Hill, N Adams, M Bada, C Batchelor, TZ Berardini, H Dietze, ... BMC genomics 14, 1-10, 2013 | 69 | 2013 |
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles KB Cohen, A Lanfranchi, MJ Choi, M Bada, WA Baumgartner, ... BMC bioinformatics 18, 1-14, 2017 | 67 | 2017 |
The colorado richly annotated full text (craft) corpus: Multi-model annotation in the biomedical domain KB Cohen, K Verspoor, K Fort, C Funk, M Bada, M Palmer, LE Hunter Handbook of Linguistic annotation, 1379-1394, 2017 | 54 | 2017 |
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies HL Johnson, KB Cohen, WA Baumgartner Jr, Z Lu, M Bada, T Kester, ... Biocomputing 2006, 28-39, 2006 | 54 | 2006 |
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 50 | 2022 |
Enrichment of OBO ontologies M Bada, L Hunter Journal of Biomedical Informatics 40 (3), 300-315, 2007 | 47 | 2007 |
Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein M Bada, D Walther, B Arcangioli, S Doniach, M Delarue Journal of Molecular Biology 300 (3), 563-574, 2000 | 47 | 2000 |
Using reasoning to guide annotation with gene ontology terms in GOAT M Bada, D Turi, R McEntire, R Stevens ACM SIGMOD Record 33 (2), 27-32, 2004 | 45 | 2004 |
Mining biochemical information: lessons taught by the ribosome. M Whirl-Carrillo, IS Gabashvili, M Bada, DR Banatao, RB Altman Rna 8 (3), 279-289, 2002 | 44 | 2002 |
An overview of the CRAFT concept annotation guidelines M Bada, M Eckert, M Palmer, L Hunter Proceedings of the Fourth Linguistic Annotation Workshop, 207-211, 2010 | 34 | 2010 |
Identification of OBO nonalignments and its implications for OBO enrichment M Bada, L Hunter Bioinformatics 24 (12), 1448-1455, 2008 | 29 | 2008 |