| Disease-associated short tandem repeats co-localize with chromatin domain boundaries JH Sun, L Zhou, DJ Emerson, SA Phyo, KR Titus, W Gong, TG Gilgenast, ... Cell 175 (1), 224-238. e15, 2018 | 212 | 2018 |
| Chromatin structure dynamics during the mitosis-to-G1 phase transition H Zhang, DJ Emerson, TG Gilgenast, KR Titus, Y Lan, P Huang, D Zhang, ... Nature 576 (7785), 158-162, 2019 | 204 | 2019 |
| The BET protein BRD2 cooperates with CTCF to enforce transcriptional and architectural boundaries SC Hsu, TG Gilgenast, CR Bartman, CR Edwards, AJ Stonestrom, ... Molecular cell 66 (1), 102-116. e7, 2017 | 144 | 2017 |
| Local genome topology can exhibit an incompletely rewired 3D-folding state during somatic cell reprogramming JA Beagan, TG Gilgenast, J Kim, Z Plona, HK Norton, G Hu, SC Hsu, ... Cell stem cell 18 (5), 611-624, 2016 | 132 | 2016 |
| LADL: light-activated dynamic looping for endogenous gene expression control JH Kim, M Rege, J Valeri, MC Dunagin, A Metzger, KR Titus, TG Gilgenast, ... Nature methods 16 (7), 633, 2019 | 125 | 2019 |
| Alteration of genome folding via contact domain boundary insertion D Zhang, P Huang, M Sharma, CA Keller, B Giardine, H Zhang, ... Nature genetics 52 (10), 1076-1087, 2020 | 44 | 2020 |
| 3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data LR Fernandez, TG Gilgenast, JE Phillips-Cremins Genome biology 21 (1), 1-44, 2020 | 18 | 2020 |
| Systematic evaluation of statistical methods for identifying looping interactions in 5C data TG Gilgenast, JE Phillips-Cremins Cell systems 8 (3), 197-211. e13, 2019 | 18 | 2019 |
| Schizophrenia-associated somatic copy number variants from 12,834 cases reveal contribution to risk and recurrent, isoform-specific NRXN1 disruptions EA Maury, MA Sherman, G Genovese, TG Gilgenast, P Rajarajan, ... medRxiv, 2021.12. 24.21268385, 2022 | 6 | 2022 |
| Re-configuration of chromatin structure during the mitosis-G1 phase transition H Zhang, DJ Emerson, TG Gilgenast, KR Titus, Y Lan, P Huang, D Zhang, ... bioRxiv, 604355, 2019 | 6 | 2019 |
| Acetylated Chromatin Domains Link Chromosomal Organization to Cell-and Circuit-level Dysfunction in Schizophrenia and Bipolar Disorder K Girdhar, GE Hoffman, J Bendl, S Rahman, P Dong, W Liao, L Brown, ... bioRxiv, 2021 | 3 | 2021 |
| Genetic drivers of repeat expansion disorders localize to 3-D chromatin domain boundaries J Sun, L Zhou, DJ Emerson, TG Gilgenast, K Titus, JA Beagan, ... bioRxiv, 191213, 2017 | 3 | 2017 |
| Development And Application Of Computational Tools For Unraveling The Structure Of The 3d Genome TG Gilgenast | 1 | 2020 |
| 3DeFDR: Identifying cell type-specific looping interactions with empirical false discovery rate guided thresholding LR Fernandez, TG Gilgenast, JE Phillips-Cremins bioRxiv, 501056, 2018 | 1 | 2018 |
| The BET Protein BRD2 Cooperates with CTCF to Enforce a Transcriptional Boundary in Erythroid Cells SC Hsu, C Bartman, AJ Stonestrom, CR Edwards, T Gilgenast, ... Blood, The Journal of the American Society of Hematology 128 (22), 1034-1034, 2016 | | 2016 |
| Identifying and modeling sources of reducing equivalents in the nitric oxide detoxification response of Escherichia coli TG Gilgenast | | 2014 |
