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Learning important features through propagating activation differences A Shrikumar, P Greenside, A Kundaje International conference on machine learning, 3145-3153, 2017 | 4807* | 2017 |
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Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of the royal society interface 15 (141), 20170387, 2018 | 1995 | 2018 |
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Wilds: A benchmark of in-the-wild distribution shifts PW Koh, S Sagawa, H Marklund, SM Xie, M Zhang, A Balsubramani, ... International conference on machine learning, 5637-5664, 2021 | 1243 | 2021 |
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The ENCODE blacklist: identification of problematic regions of the genome HM Amemiya, A Kundaje, AP Boyle Scientific reports 9 (1), 9354, 2019 | 1219 | 2019 |
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ... Nature genetics 48 (10), 1193-1203, 2016 | 1078 | 2016 |
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Linking disease associations with regulatory information in the human genome MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder Genome research 22 (9), 1748-1759, 2012 | 879 | 2012 |
Defining functional DNA elements in the human genome M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ... Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014 | 878 | 2014 |
Opportunities and challenges for transcriptome-wide association studies M Wainberg, N Sinnott-Armstrong, N Mancuso, AN Barbeira, DA Knowles, ... Nature genetics 51 (4), 592-599, 2019 | 697 | 2019 |
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers S Onengut-Gumuscu, WM Chen, O Burren, NJ Cooper, AR Quinlan, ... Nature genetics 47 (4), 381-386, 2015 | 681 | 2015 |
Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research 41 (2), 827-841, 2013 | 605 | 2013 |
Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease E Gjoneska, AR Pfenning, H Mathys, G Quon, A Kundaje, LH Tsai, ... Nature 518 (7539), 365-369, 2015 | 584 | 2015 |