| The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition H Sperber, J Mathieu, Y Wang, A Ferreccio, J Hesson, Z Xu, KA Fischer, ... Nature cell biology 17 (12), 1523-1535, 2015 | 437 | 2015 |
| Circadian clock-regulated phosphate transporter PHT4; 1 plays an important role in Arabidopsis defense GY Wang, JL Shi, G Ng, SL Battle, C Zhang, H Lu Molecular plant 4 (3), 516-526, 2011 | 90 | 2011 |
| Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency J Mathieu, D Detraux, D Kuppers, Y Wang, C Cavanaugh, S Sidhu, ... Nature communications 10 (1), 632, 2019 | 58 | 2019 |
| The phosphate transporter PHT4;1 is a salicylic acid regulator likely controlled by the circadian clock protein CCA1 G Wang, C Zhang, S Battle, H Lu Frontiers in Plant Science 5, 701, 2014 | 42 | 2014 |
| Enhancer chromatin and 3D genome architecture changes from naive to primed human embryonic stem cell states SL Battle, ND Jayavelu, RN Azad, J Hesson, FN Ahmed, EG Overbey, ... Stem cell reports 12 (5), 1129-1144, 2019 | 41 | 2019 |
| Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation B Yu, N Doni Jayavelu, SL Battle, JC Mar, T Schimmel, J Cohen, ... PLoS One 15 (11), e0241698, 2020 | 35 | 2020 |
| Superovulation alters global DNA methylation in early mouse embryo development B Yu, TH Smith, SL Battle, S Ferrell, RD Hawkins Epigenetics 14 (8), 780-790, 2019 | 34 | 2019 |
| Methylome analysis of human bone marrow MSCs reveals extensive age-and culture-induced changes at distal regulatory elements KK Pasumarthy, ND Jayavelu, L Kilpinen, C Andrus, SL Battle, ... Stem Cell Reports 9 (3), 999-1015, 2017 | 32 | 2017 |
| A bioinformatics pipeline for estimating mitochondrial DNA copy number and heteroplasmy levels from whole genome sequencing data SL Battle, D Puiu, TOPMed mtDNA Working Group, J Verlouw, L Broer, ... NAR Genomics and Bioinformatics 4 (2), lqac034, 2022 | 25 | 2022 |
| Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer. RDHSIL Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W ... Genome Medicine, 2016 | 25 | 2016 |
| cChIP-seq: a robust small-scale method for investigation of histone modifications C Valensisi, JL Liao, C Andrus, SL Battle, RD Hawkins BMC genomics 16, 1-11, 2015 | 16 | 2015 |
| Deleterious heteroplasmic mitochondrial mutations are associated with an increased risk of overall and cancer-specific mortality YS Hong, SL Battle, W Shi, D Puiu, V Pillalamarri, J Xie, N Pankratz, ... Nature communications 14 (1), 6113, 2023 | 9 | 2023 |
| Long-term air pollution exposure and mitochondrial DNA copy number: an analysis of UK biobank data YS Hong, SL Battle, D Puiu, W Shi, N Pankratz, D Zhao, DE Arking, ... Environmental health perspectives 131 (5), 057703, 2023 | 5 | 2023 |
| Rare and common genetic determinants of mitochondrial function determine severity but not risk of amyotrophic lateral sclerosis C Harvey, M Weinreich, JAK Lee, AC Shaw, L Ferraiuolo, H Mortiboys, ... Heliyon 10 (3), 2024 | 4 | 2024 |
| Quantifying constraint in the human mitochondrial genome NJ Lake, K Ma, W Liu, SL Battle, KM Laricchia, G Tiao, D Puiu, KK Ng, ... Nature, 1-8, 2024 | 3 | 2024 |
| Mitochondrial function determines severity but not risk of amyotrophic lateral sclerosis C Harvey, M Weinreich, S Zhang, PJ Hop, RAJ Zwamborn, K van Eijk, ... BioRxiv, 2022.05. 31.494229, 2022 | 2 | 2022 |
| Rare instances of non-random dropout with the monochrome multiplex qPCR assay for mitochondrial DNA copy number SY Yang, CE Newcomb, SL Battle, AYY Hsieh, HL Chapman, HCF Côté, ... bioRxiv, 2021.10. 11.463983, 2021 | 2 | 2021 |
| Abstract AS04: Epigenomic characterization of gene regulatory networks in human ovarian cancer stem cells SL Battle, A Larjo, J Liao, H Lähdesmäki, A Lieber, RD Hawkins Clinical Cancer Research 21 (16_Supplement), AS04-AS04, 2015 | 2 | 2015 |
| Deleterious heteroplasmic mitochondrial mutations increase risk of overall and cancer-specific mortality SL Battle, YS Hong, W Shi, D Puiu, V Pillalamarri, N Pankratz, NJ Lake, ... medRxiv, 2022.09. 20.22280151, 2022 | 1 | 2022 |
| The epigenetics of pluripotent stem cells SL Battle, RD Hawkins Stem Cell Epigenetics 17, 25, 2020 | 1 | 2020 |
