| In silico prediction of high-resolution Hi-C interaction matrices S Zhang, D Chasman, S Knaack, S Roy Nature communications 10 (1), 5449, 2019 | 66 | 2019 |
| Spatiotemporal regulation of GLI target genes in the mammalian limb bud JP Lewandowski, F Du, S Zhang, MB Powell, KN Falkenstein, H Ji, ... Developmental biology 406 (1), 92-103, 2015 | 60 | 2015 |
| Integrative Genomic Analysis Predicts Causative Cis-Regulatory Mechanisms of the Breast Cancer–Associated Genetic Variant rs4415084 Y Zhang, M Manjunath, S Zhang, D Chasman, S Roy, JS Song Cancer research 78 (7), 1579-1591, 2018 | 40 | 2018 |
| Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets S Zhang, S Pyne, S Pietrzak, S Halberg, SG McCalla, AF Siahpirani, ... Nature Communications 14 (1), 3064, 2023 | 36 | 2023 |
| OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae S Zuo, X Zhou, M Chen, S Zhang, B Schwessinger, D Ruan, C Yuan, ... Journal of integrative plant biology 56 (12), 1179-1192, 2014 | 35 | 2014 |
| The cancer-associated genetic variant Rs3903072 modulates immune cells in the tumor microenvironment Y Zhang, M Manjunath, J Yan, BA Baur, S Zhang, S Roy, JS Song Frontiers in genetics 10, 754, 2019 | 31 | 2019 |
| Data integration for inferring context-specific gene regulatory networks B Baur, J Shin, S Zhang, S Roy Current opinion in systems biology 23, 38-46, 2020 | 11 | 2020 |
| Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation B Baur, J Shin, J Schreiber, S Zhang, Y Zhang, M Manjunath, JS Song, ... PLoS computational biology 19 (7), e1011286, 2023 | 5 | 2023 |
| ABC-GWAS: functional annotation of estrogen receptor-positive breast cancer genetic variants M Manjunath, Y Zhang, S Zhang, S Roy, P Perez-Pinera, JS Song Frontiers in Genetics 11, 730, 2020 | 5 | 2020 |
| A novel DNA sequence motif in human and mouse genomes S Zhang, F Du, H Ji Scientific reports 5 (1), 10444, 2015 | 3 | 2015 |
| Test And Reliability Improvement With Defect-Image Classification And Machine-Learning Algorithms In Semiconductor Industry For Automotive Applications C Bergès, S Zhang, A Létévé, O Anilturk, J Bird, E Lumanauw, MD Shroff, ... 2023 IEEE International Symposium on the Physical and Failure Analysis of …, 2023 | | 2023 |
| Enabling Studies of Genome-Scale Regulatory Network Evolution in Large Phylogenies Phylogenies with MRTLE S Zhang, S Knaack, S Roy Yeast Functional Genomics: Methods and Protocols, 439-455, 2022 | | 2022 |
| Computational approaches to understand cell type specific gene regulation S Zhang The University of Wisconsin - Madison, 2021 | | 2021 |
| Transcription factor binding motif analyses in two biological systems S Zhang Johns Hopkins University, 2014 | | 2014 |
