| Tubuloids derived from human adult kidney and urine for personalized disease modeling F Schutgens, MB Rookmaaker, T Margaritis, A Rios, C Ammerlaan, ... Nature biotechnology 37 (3), 303-313, 2019 | 368 | 2019 |
| Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ... Cell 157 (3), 740-752, 2014 | 328 | 2014 |
| The specificity and topology of chromatin interaction pathways in yeast TL Lenstra, JJ Benschop, TS Kim, JM Schulze, NACH Brabers, ... Molecular cell 42 (4), 536-549, 2011 | 260 | 2011 |
| An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity C Calandrini, F Schutgens, R Oka, T Margaritis, T Candelli, L Mathijsen, ... Nature communications 11 (1), 1310, 2020 | 229 | 2020 |
| CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing JK De Kanter, P Lijnzaad, T Candelli, T Margaritis, FCP Holstege Nucleic acids research 47 (16), e95-e95, 2019 | 222 | 2019 |
| Poised RNA polymerase II gives pause for thought T Margaritis, FCP Holstege Cell 133 (4), 581-584, 2008 | 196 | 2008 |
| Functional overlap and regulatory links shape genetic interactions between signaling pathways S van Wageningen, P Kemmeren, P Lijnzaad, T Margaritis, JJ Benschop, ... Cell 143 (6), 991-1004, 2010 | 150 | 2010 |
| Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3′-end antisense transcription T Margaritis, V Oreal, N Brabers, L Maestroni, A Vitaliano-Prunier, ... Public Library of Science 8 (9), e1002952, 2012 | 142 | 2012 |
| Cell cycle population effects in perturbation studies E O'Duibhir, P Lijnzaad, JJ Benschop, TL Lenstra, D van Leenen, ... Molecular systems biology 10 (6), 732, 2014 | 114 | 2014 |
| Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell G Kildisiute, WM Kholosy, MD Young, K Roberts, R Elmentaite, ... Science advances 7 (6), eabd3311, 2021 | 103 | 2021 |
| Optimized human intestinal organoid model reveals interleukin-22-dependency of paneth cell formation GW He, L Lin, J DeMartino, X Zheng, N Staliarova, T Dayton, H Begthel, ... Cell Stem Cell 29 (9), 1333-1345. e6, 2022 | 67 | 2022 |
| Dominant and redundant functions of TFIID involved in the regulation of hepatic genes A Tatarakis, T Margaritis, CP Martinez-Jimenez, A Kouskouti, WS Mohan, ... Molecular cell 31 (4), 531-543, 2008 | 66 | 2008 |
| H2B ubiquitylation controls the formation of export-competent mRNP A Vitaliano-Prunier, A Babour, L Hérissant, L Apponi, T Margaritis, ... Molecular cell 45 (1), 132-139, 2012 | 61 | 2012 |
| Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype ES Hanemaaijer, T Margaritis, K Sanders, FL Bos, T Candelli, H Al-Saati, ... Proceedings of the National Academy of Sciences 118 (5), e2022350118, 2021 | 58 | 2021 |
| Transcriptome analysis approaches for the isolation of trichome-specific genes from the medicinal plant Cistus creticus subsp. creticus V Falara, V Fotopoulos, T Margaritis, T Anastasaki, I Pateraki, ... Plant molecular biology 68, 633-651, 2008 | 52 | 2008 |
| Adaptable gene‐specific dye bias correction for two‐channel DNA microarrays T Margaritis, P Lijnzaad, D Van Leenen, D Bouwmeester, P Kemmeren, ... Molecular Systems Biology 5 (1), 266, 2009 | 51 | 2009 |
| Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis E Apweiler, K Sameith, T Margaritis, N Brabers, L van de Pasch, ... BMC genomics 13, 1-14, 2012 | 37 | 2012 |
| Single cell derived mRNA signals across human kidney tumors MD Young, TJ Mitchell, L Custers, T Margaritis, F Morales-Rodriguez, ... Nature Communications 12 (1), 3896, 2021 | 35 | 2021 |
| Coordination of cell cycle progression and mitotic spindle assembly involves histone H3 lysine 4 methylation by Set1/COMPASS TH Beilharz, PF Harrison, DM Miles, MM See, UMM Le, M Kalanon, ... Genetics 205 (1), 185-199, 2017 | 32 | 2017 |
| Microarray image denoising using a two-stage multiresolution technique H Stefanou, T Margaritis, D Kafetzopoulos, K Marias, P Tsakalides 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2007 | 19 | 2007 |
