| Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 56 | 2022 |
| Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ... Cell 185 (20), 3689-3704. e21, 2022 | 40 | 2022 |
| Predicting enhancers in mammalian genomes using supervised hidden Markov models T Zehnder, P Benner, M Vingron BMC bioinformatics 20, 1-12, 2019 | 17 | 2019 |
| Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ... bioRxiv, 2021.08. 09.454869, 2021 | 6 | 2021 |
| Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ... BioRxiv, 2021.10. 08.463672, 2021 | 5 | 2021 |
| Conservation of regulatory elements with highly diverged sequences across large evolutionary distances MHQ Phan, TM Zehnder, F Puntieri, BW Lo, B Lenhard, F Mueller, ... bioRxiv, 2024.05. 13.590087, 2024 | 1 | 2024 |
| Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development M Schindler, C Feregrino, S Aldrovandi, BW Lo, AA Monaco, AR Ringel, ... bioRxiv, 2024.10. 10.617585, 2024 | | 2024 |
| Computational Approaches for the Prediction of Gene Regulatory Elements and the Analysis of Their Evolutionary Conservation T Zehnder PQDT-Global, 2020 | | 2020 |
