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diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates L Shen, NY Shao, X Liu, I Maze, J Feng, EJ Nestler PloS one 8 (6), e65598, 2013 | 386 | 2013 |
β-catenin mediates stress resilience through Dicer1/microRNA regulation C Dias, J Feng, H Sun, NY Shao, MS Mazei-Robison, D Damez-Werno, ... Nature 516 (7529), 51-55, 2014 | 276 | 2014 |
Locus-specific epigenetic remodeling controls addiction-and depression-related behaviors EA Heller, HM Cates, CJ Peña, H Sun, N Shao, J Feng, SA Golden, ... Nature neuroscience 17 (12), 1720-1727, 2014 | 224 | 2014 |
Patient-specific iPSC-derived endothelial cells uncover pathways that protect against pulmonary hypertension in BMPR2 mutation carriers M Gu*, NY Shao*, S Sa, D Li, V Termglinchan, M Ameen, I Karakikes, ... Cell stem cell 20 (4), 490-504. e5, 2017 | 201 | 2017 |
Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens J Feng, M Wilkinson, X Liu, I Purushothaman, D Ferguson, V Vialou, ... Genome biology 15, 1-18, 2014 | 182 | 2014 |
Role of Tet1 and 5-hydroxymethylcytosine in cocaine action J Feng, N Shao, KE Szulwach, V Vialou, J Huynh, C Zhong, T Le, ... Nature neuroscience 18 (4), 536-544, 2015 | 175 | 2015 |
Transcriptome profiling of patient-specific human iPSC-cardiomyocytes predicts individual drug safety and efficacy responses in vitro E Matsa, PW Burridge, KH Yu, JH Ahrens, V Termglinchan, H Wu, C Liu, ... Cell stem cell 19 (3), 311-325, 2016 | 171 | 2016 |
Autologous iPSC-based vaccines elicit anti-tumor responses in vivo NG Kooreman, Y Kim, PE de Almeida, V Termglinchan, S Diecke, ... Cell stem cell 22 (4), 501-513. e7, 2018 | 161 | 2018 |
Comprehensive survey of human brain microRNA by deep sequencing NY Shao*, HY Hu*, Z Yan, Y Xu, H Hu, C Menzel, N Li, W Chen, ... BMC genomics 11 (1), 409, 2010 | 158 | 2010 |
Essential role of SIRT1 signaling in the nucleus accumbens in cocaine and morphine action D Ferguson, JW Koo, J Feng, E Heller, J Rabkin, M Heshmati, W Renthal, ... Journal of Neuroscience 33 (41), 16088-16098, 2013 | 132 | 2013 |
A human iPSC double-reporter system enables purification of cardiac lineage subpopulations with distinct function and drug response profiles JZ Zhang, V Termglinchan, NY Shao, I Itzhaki, C Liu, N Ma, L Tian, ... Cell Stem Cell 24 (5), 802-811. e5, 2019 | 120 | 2019 |
SIRT1-FOXO3a regulate cocaine actions in the nucleus accumbens D Ferguson, N Shao, E Heller, J Feng, R Neve, HD Kim, T Call, S Magazu, ... Journal of Neuroscience 35 (7), 3100-3111, 2015 | 99 | 2015 |
Analytical tools and current challenges in the modern era of neuroepigenomics EJN Ian Maze, Li Shen, Bin Zhang, Benjamin A Garcia, Ningyi Shao, Amanda ... NATURE NEUROSCIENCE 17, 1476–1490, 2014 | 99 | 2014 |
ACF chromatin-remodeling complex mediates stress-induced depressive-like behavior HS Sun, DM Damez-Werno, KN Scobie, NY Shao, C Dias, J Rabkin, ... Nature medicine 21 (10), 1146-1153, 2015 | 95 | 2015 |
Tex10 coordinates epigenetic control of super-enhancer activity in pluripotency and reprogramming J Ding, X Huang, N Shao, H Zhou, DF Lee, F Faiola, M Fidalgo, D Guallar, ... Cell stem cell 16 (6), 653-668, 2015 | 94 | 2015 |
BRD4 regulates Nanog expression in mouse embryonic stem cells and preimplantation embryos W Liu, P Stein, X Cheng, W Yang, NY Shao, EE Morrisey, RM Schultz, ... Cell Death & Differentiation 21 (12), 1950-1960, 2014 | 93 | 2014 |
Induced pluripotent stem cell model of pulmonary arterial hypertension reveals novel gene expression and patient specificity S Sa, M Gu, J Chappell, NY Shao, M Ameen, KAT Elliott, D Li, F Grubert, ... American journal of respiratory and critical care medicine 195 (7), 930-941, 2017 | 88 | 2017 |
Elevated NSD3 histone methylation activity drives squamous cell lung cancer G Yuan, NM Flores, S Hausmann, SM Lofgren, V Kharchenko, ... Nature, 1-5, 2021 | 85 | 2021 |
Molecular and functional resemblance of differentiated cells derived from isogenic human iPSCs and SCNT-derived ESCs MT Zhao, H Chen, Q Liu, NY Shao, N Sayed, HT Wo, JZ Zhang, SG Ong, ... Proceedings of the National Academy of Sciences 114 (52), E11111-E11120, 2017 | 76 | 2017 |