| Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis P Bradley, NC Gordon, TM Walker, L Dunn, S Heys, B Huang, S Earle, ... Nature communications 6 (1), 10063, 2015 | 640 | 2015 |
| Same-day diagnostic and surveillance data for tuberculosis via whole-genome sequencing of direct respiratory samples AA Votintseva, P Bradley, L Pankhurst, C del Ojo Elias, M Loose, ... Journal of clinical microbiology 55 (5), 1285-1298, 2017 | 393 | 2017 |
| Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study LJ Pankhurst, C del Ojo Elias, AA Votintseva, TM Walker, K Cole, J Davies, ... The Lancet Respiratory Medicine 4 (1), 49-58, 2016 | 383 | 2016 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 323 | 2016 |
| Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC AE Sheppard, N Stoesser, DJ Wilson, R Sebra, A Kasarskis, LW Anson, ... Antimicrobial agents and chemotherapy 60 (6), 3767-3778, 2016 | 296 | 2016 |
| Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing AJ Mathers, N Stoesser, AE Sheppard, L Pankhurst, A Giess, AJ Yeh, ... Antimicrobial agents and chemotherapy 59 (3), 1656-1663, 2015 | 156 | 2015 |
| A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase-producing Escherichia coli demonstrates carbapenemase gene outbreaks involving sink sites require … V Decraene, HTT Phan, R George, DH Wyllie, O Akinremi, Z Aiken, ... Antimicrobial agents and chemotherapy 62 (12), 10.1128/aac. 01689-18, 2018 | 136 | 2018 |
| Microbiome diversity protects against pathogens by nutrient blocking F Spragge, E Bakkeren, MT Jahn, E BN Araujo, CF Pearson, X Wang, ... Science 382 (6676), eadj3502, 2023 | 125 | 2023 |
| Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli N Stoesser, AE Sheppard, G Peirano, LW Anson, L Pankhurst, R Sebra, ... Scientific reports 7 (1), 5917, 2017 | 121 | 2017 |
| Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures AA Votintseva, LJ Pankhurst, LW Anson, MR Morgan, D Gascoyne-Binzi, ... Journal of clinical microbiology 53 (4), 1137-1143, 2015 | 114 | 2015 |
| Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches S George, L Pankhurst, A Hubbard, A Votintseva, N Stoesser, ... Microbial genomics 3 (8), 2017 | 112 | 2017 |
| Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome … J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ... Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017 | 111 | 2017 |
| Spatial variations in airborne microorganism and endotoxin concentrations at green waste composting facilities LJ Pankhurst, LJ Deacon, J Liu, GH Drew, ET Hayes, S Jackson, ... International journal of hygiene and environmental health 214 (5), 376-383, 2011 | 67 | 2011 |
| Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape DM Muloi, BA Wee, DMH McClean, MJ Ward, L Pankhurst, H Phan, ... Nature Microbiology 7 (4), 581-589, 2022 | 59 | 2022 |
| Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... Genome biology 22, 1-30, 2021 | 59 | 2021 |
| Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study. Lancet Respir Med 4: 49–58 LJ Pankhurst, C Del Ojo Elias, AA Votintseva, TM Walker, K Cole, ... | 54 | 2016 |
| Temporal and spatial changes in the microbial bioaerosol communities in green-waste composting LJ Pankhurst, C Whitby, M Pawlett, LD Larcombe, B McKew, LJ Deacon, ... FEMS microbiology ecology 79 (1), 229-239, 2012 | 54 | 2012 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... Evolutionary history of the global emergence of the Escherichia coli …, 0 | 51 | |
| Influenza virus survival in aerosols and estimates of viable virus loss resulting from aerosolization and air-sampling JR Brown, JW Tang, L Pankhurst, N Klein, V Gant, KM Lai, J McCauley, ... Journal of Hospital Infection 91 (3), 278-281, 2015 | 50 | 2015 |
| Modernising Medical Microbiology (MMM) Informatics Group, Sifri CD, Walker AS, Peto TE, Crook DW, Mathers AJ. 2016. Nested Russian doll-like genetic mobility drives rapid … AE Sheppard, N Stoesser, DJ Wilson, R Sebra, A Kasarskis, LW Anson, ... Antimicrob Agents Chemother 60 (6), 3767-3778, 0 | 46 | |
