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| Which genetics variants in DNase-Seq footprints are more likely to alter binding? GA Moyerbrailean, CA Kalita, CT Harvey, X Wen, F Luca, R Pique-Regi PLoS genetics 12 (2), e1005875, 2016 | 68 | 2016 |
| Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions AS Findley, A Monziani, AL Richards, K Rhodes, MC Ward, CA Kalita, ... Elife 10, e67077, 2021 | 51 | 2021 |
| High-throughput characterization of genetic effects on DNA–protein binding and gene transcription CA Kalita, CD Brown, A Freiman, J Isherwood, X Wen, R Pique-Regi, ... Genome research 28 (11), 1701-1708, 2018 | 40 | 2018 |
| QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays CA Kalita, GA Moyerbrailean, C Brown, X Wen, F Luca, R Pique-Regi Bioinformatics 34 (5), 787-794, 2018 | 34 | 2018 |
| Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation SC Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, Y Ding, ... Nature genetics 54 (9), 1364-1375, 2022 | 26 | 2022 |
| Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor … R Romero, AL Tarca, P Chaemsaithong, J Miranda, T Chaiworapongsa, ... The Journal of Maternal-Fetal & Neonatal Medicine 27 (14), 1397-1408, 2014 | 25 | 2014 |
| A signature of Neanderthal introgression on molecular mechanisms of environmental responses AS Findley, X Zhang, C Boye, YL Lin, CA Kalita, L Barreiro, ... PLoS Genetics 17 (9), e1009493, 2021 | 11 | 2021 |
| Are all genetic variants in DNase I sensitivity regions functional? GA Moyerbrailean, CT Harvey, CA Kalita, X Wen, F Luca, R Pique-Regi bioRxiv, 007559, 2014 | 3 | 2014 |
| Characterization of caffeine response regulatory variants in vascular endothelial cells C Boye, CA Kalita, AS Findley, A Alazizi, J Wei, X Wen, R Pique-Regi, ... Elife 13, e85235, 2024 | 2 | 2024 |
| DeCAF: a novel method to identify cell-type specific regulatory variants and their role in cancer risk CA Kalita, A Gusev Genome Biology 23 (1), 152, 2022 | 1 | 2022 |
| A novel method to identify cell-type specific regulatory variants and their role in cancer risk CA Kalita, A Gusev bioRxiv, 2021.11. 11.468278, 2021 | 1 | 2021 |
| Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation M Freedman, S Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, ... | | 2021 |
| High throughput characterization of genetic effects on DNA: protein binding and gene transcription C Kalita, C Brown, A Freiman, X Wen, R Pique-Regi, F Luca EUROPEAN JOURNAL OF HUMAN GENETICS 27, 833-834, 2019 | | 2019 |
| circuitSNPs: Predicting genetic effects using a Neural Network to model regulatory modules of DNase-seq footprints AG Shanku, A Findley, C Kalita, H Shim, F Luca, R Pique-Regi bioRxiv, 337774, 2018 | | 2018 |
| Validating Functional Mechanisms For Non-Coding Genetic Variants Associated With Complex Traits CA Kalita Wayne State University, 2018 | | 2018 |
| MA, USA SC Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, Y Ding, ... | | |
| Supplemental Material for: Which genetic variants in DNase-seq footprints are more likely to alter binding? GA Moyerbrailean, CA Kalita, CT Harvey, X Wen, F Luca, R Pique-Regi | | |
