Dysbiosis and the immune system M Levy, AA Kolodziejczyk, CA Thaiss, E Elinav Nature Reviews Immunology 17 (4), 219-232, 2017 | 1513 | 2017 |
The technology and biology of single-cell RNA sequencing AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann Molecular cell 58 (4), 610-620, 2015 | 1323 | 2015 |
Accounting for technical noise in single-cell RNA-seq experiments P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ... Nature methods 10 (11), 1093-1095, 2013 | 1050 | 2013 |
Diet–microbiota interactions and personalized nutrition AA Kolodziejczyk, D Zheng, E Elinav Nature Reviews Microbiology 17 (12), 742-753, 2019 | 700 | 2019 |
Classification of low quality cells from single-cell RNA-seq data T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ... Genome biology 17, 1-15, 2016 | 679 | 2016 |
Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic, J Henriksson, ... Cell stem cell 17 (4), 471-485, 2015 | 565 | 2015 |
The role of the microbiome in NAFLD and NASH AA Kolodziejczyk, D Zheng, O Shibolet, E Elinav EMBO molecular medicine 11 (2), e9302, 2019 | 464 | 2019 |
Bile acids in glucose metabolism in health and disease H Shapiro, AA Kolodziejczyk, D Halstuch, E Elinav Journal of Experimental Medicine 215 (2), 383-396, 2018 | 382 | 2018 |
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression JK Kim, AA Kolodziejczyk, T Ilicic, SA Teichmann, JC Marioni Nature communications 6 (1), 8687, 2015 | 336 | 2015 |
Aging increases cell-to-cell transcriptional variability upon immune stimulation CP Martinez-Jimenez, N Eling, HC Chen, CA Vallejos, AA Kolodziejczyk, ... Science 355 (6332), 1433-1436, 2017 | 325 | 2017 |
Establishment of mouse expanded potential stem cells J Yang, DJ Ryan, W Wang, JCH Tsang, G Lan, H Masaki, X Gao, ... Nature 550 (7676), 393-397, 2017 | 268 | 2017 |
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis B Mahata, X Zhang, AA Kolodziejczyk, V Proserpio, L Haim-Vilmovsky, ... Cell reports 7 (4), 1130-1142, 2014 | 223 | 2014 |
Cell-type specialization is encoded by specific chromatin topologies W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ... Nature 599 (7886), 684-691, 2021 | 141 | 2021 |
Acute liver failure is regulated by MYC-and microbiome-dependent programs AA Kolodziejczyk, S Federici, N Zmora, G Mohapatra, M Dori-Bachash, ... Nature medicine 26 (12), 1899-1911, 2020 | 116 | 2020 |
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells JCH Tsang, Y Yu, S Burke, F Buettner, C Wang, AA Kolodziejczyk, ... Genome biology 16, 1-16, 2015 | 116 | 2015 |
The spatiotemporal program of zonal liver regeneration following acute injury S Ben-Moshe, T Veg, R Manco, S Dan, D Papinutti, A Lifshitz, ... Cell Stem Cell 29 (6), 973-989. e10, 2022 | 92 | 2022 |
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression G Kar, JK Kim, AA Kolodziejczyk, KN Natarajan, E Torlai Triglia, B Mifsud, ... Nature communications 8 (1), 36, 2017 | 79 | 2017 |
Gut microbiota modulates weight gain in mice after discontinued smoke exposure L Fluhr, U Mor, AA Kolodziejczyk, M Dori-Bachash, A Leshem, S Itav, ... Nature 600 (7890), 713-719, 2021 | 52 | 2021 |
Commensal inter-bacterial interactions shaping the microbiota L Kern, SK Abdeen, AA Kolodziejczyk, E Elinav Current opinion in microbiology 63, 158-171, 2021 | 43 | 2021 |
Global and targeted approaches to single-cell transcriptome characterization AA Kolodziejczyk, T Lönnberg Briefings in functional genomics 17 (4), 209-219, 2018 | 37 | 2018 |