MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009 | 9462 | 2009 |
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ... Genome research 26 (6), 719-731, 2016 | 346 | 2016 |
Potential in vivo roles of nucleic acid triple-helices FA Buske, JS Mattick, TL Bailey RNA biology 8 (3), 427-439, 2011 | 221 | 2011 |
Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data FA Buske, DC Bauer, JS Mattick, TL Bailey Genome research 22 (7), 1372-1381, 2012 | 219 | 2012 |
PARTICLE, a triplex-forming long ncRNA, regulates locus-specific methylation in response to low-dose irradiation VB O’Leary, SV Ovsepian, LG Carrascosa, FA Buske, V Radulovic, ... Cell reports 11 (3), 474-485, 2015 | 216 | 2015 |
Assigning roles to DNA regulatory motifs using comparative genomics FA Buske, M Bodén, DC Bauer, TL Bailey Bioinformatics 26 (7), 860-866, 2010 | 206 | 2010 |
Epigenetic priors for identifying active transcription factor binding sites G Cuellar-Partida, FA Buske, RC McLeay, T Whitington, WS Noble, ... Bioinformatics 28 (1), 56-62, 2012 | 148 | 2012 |
WT1 controls antagonistic FGF and BMP-pSMAD pathways in early renal progenitors FJ Motamedi, DA Badro, M Clarkson, M Rita Lecca, ST Bradford, ... Nature communications 5 (1), 4444, 2014 | 122 | 2014 |
Acetylated histone variant H2A. Z is involved in the activation of neo-enhancers in prostate cancer F Valdés-Mora, CM Gould, Y Colino-Sanguino, W Qu, JZ Song, KM Taylor, ... Nature Communications 8 (1), 1346, 2017 | 83 | 2017 |
Aquaria: simplifying discovery and insight from protein structures SI O'donoghue, KS Sabir, M Kalemanov, C Stolte, B Wellmann, V Ho, ... Nature methods 12 (2), 98-99, 2015 | 69 | 2015 |
Alternatively spliced isoforms of WT1 control podocyte-specific gene expression J Lefebvre, M Clarkson, F Massa, ST Bradford, A Charlet, F Buske, ... Kidney international 88 (2), 321-331, 2015 | 48 | 2015 |
VariantSpark: population scale clustering of genotype information AR O’Brien, NFW Saunders, Y Guo, FA Buske, RJ Scott, DC Bauer BMC genomics 16, 1-9, 2015 | 37 | 2015 |
Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci FA Buske, DC Bauer, JS Mattick, TL Bailey Bioinformatics 29 (15), 1895-1897, 2013 | 37 | 2013 |
Genomics and personalised whole-of-life healthcare DC Bauer, C Gaff, ME Dinger, M Caramins, FA Buske, M Fenech, ... Trends in molecular medicine 20 (9), 479-486, 2014 | 29 | 2014 |
NGSANE: a lightweight production informatics framework for high-throughput data analysis FA Buske, HJ French, MA Smith, SJ Clark, DC Bauer Bioinformatics 30 (10), 1471-1472, 2014 | 28 | 2014 |
Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster DC Bauer, FA Buske, TL Bailey BMC bioinformatics 11, 1-14, 2010 | 28 | 2010 |
PARTICLE triplexes cluster in the tumor suppressor WWOX and may extend throughout the human genome VB O’Leary, J Smida, FA Buske, LG Carrascosa, O Azimzadeh, D Maugg, ... Scientific reports 7 (1), 7163, 2017 | 27 | 2017 |
Sorting the nuclear proteome DC Bauer, K Willadsen, FA Buske, KA Lê Cao, TL Bailey, G Dellaire, ... Bioinformatics 27 (13), i7-i14, 2011 | 25 | 2011 |
In silico characterization of protein chimeras: relating sequence and function within the same fold FA Buske, R Their, EMJ Gillam, M Bodén Proteins: Structure, Function, and Bioinformatics 77 (1), 111-120, 2009 | 15 | 2009 |
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster DC Bauer, FA Buske, TL Bailey, M Bodén Neurocomputing 73 (13-15), 2300-2307, 2010 | 5 | 2010 |