| Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data F Favero, T Joshi, AM Marquard, NJ Birkbak, M Krzystanek, Q Li, ... Annals of Oncology 26 (1), 64-70, 2015 | 727 | 2015 |
| Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution SM Dewhurst, N McGranahan, RA Burrell, AJ Rowan, E Grönroos, ... Cancer discovery 4 (2), 175-185, 2014 | 450 | 2014 |
| LocARNA-P: accurate boundary prediction and improved detection of structural RNAs S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen Rna 18 (5), 900-914, 2012 | 401 | 2012 |
| Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs AM Marquard, AC Eklund, T Joshi, M Krzystanek, F Favero, ZC Wang, ... Biomarker research 3, 1-10, 2015 | 262 | 2015 |
| SETD2 loss-of-function promotes renal cancer branched evolution through replication stress and impaired DNA repair N Kanu, E Grönroos, P Martinez, RA Burrell, X Yi Goh, J Bartkova, ... Oncogene 34 (46), 5699-5708, 2015 | 192 | 2015 |
| Systematic evaluation of the prognostic impact and intratumour heterogeneity of clear cell renal cell carcinoma biomarkers S Gulati, P Martinez, T Joshi, NJ Birkbak, CR Santos, AJ Rowan, ... European urology 66 (5), 936-948, 2014 | 175 | 2014 |
| RNA–protein interactions: an overview A Re, T Joshi, E Kulberkyte, Q Morris, CT Workman RNA sequence, structure, and function: Computational and bioinformatic …, 2014 | 154 | 2014 |
| Parallel evolution of tumour subclones mimics diversity between tumours P Martinez, NJ Birkbak, M Gerlinger, N McGranahan, RA Burrell, ... The Journal of pathology 230 (4), 356-364, 2013 | 102 | 2013 |
| Genome‐wide analysis of cytogenetic aberrations in ETV6/RUNX1‐positive childhood acute lymphoblastic leukaemia L Borst, A Wesolowska, T Joshi, R Borup, FC Nielsen, MK Andersen, ... British journal of haematology 157 (4), 476-482, 2012 | 38 | 2012 |
| Integrative analysis of miRNA and gene expression reveals regulatory networks in tamoxifen-resistant breast cancer T Joshi, D Elias, J Stenvang, CL Alves, F Teng, MB Lyng, AE Lykkesfeldt, ... Oncotarget 7 (35), 57239-57253, 2016 | 37 | 2016 |
| Back to the roots: prediction of biologically active natural products from ayurveda traditional medicine H Polur, T Joshi, CT Workman, G Lavekar, I Kouskoumvekaki Molecular informatics 30 (2‐3), 181-187, 2011 | 29 | 2011 |
| MicroRNA profiling in ocular adnexal lymphoma: a role for MYC and NFKB1 mediated dysregulation of microRNA expression in aggressive disease C Hother, PK Rasmussen, T Joshi, D Reker, U Ralfkiær, CT Workman, ... Investigative ophthalmology & visual science 54 (8), 5169-5175, 2013 | 28 | 2013 |
| Vancomycin gene selection in the microbiome of urban Rattus norvegicus from hospital environment TA Hansen, T Joshi, AR Larsen, PS Andersen, K Harms, S Mollerup, ... Evolution, Medicine, and Public Health 2016 (1), 219-226, 2016 | 16 | 2016 |
| High diversity of picornaviruses in rats from different continents revealed by deep sequencing TA Hansen, S Mollerup, N Nguyen, NE White, M Coghlan, ... Emerging microbes & infections 5 (1), 1-8, 2016 | 15 | 2016 |
| LocARNA-P: Accurate boundary prediction and improved detection of structured RNAs for genome-wide screens S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen RNA, 2011 | 3 | 2011 |
| The role of miRNA regulation in cancer progression and drug resistance T Joshi Technical University of Denmark, 2012 | 1 | 2012 |
| sequenza usage example F Favero, T Joshi, AM Marquard, AC Eklund | | 2015 |
| MicroRNA Profiling in Low-Grade Ocular MALT and Diffuse Large B-Cell Lymphoma: A Role for MYC and NFKB1 Mediated Dysregulation of MicroRNA Expression in Aggressive Disease C Hother, PK Rasmussen, T Joshi, D Reker, U Ralfkiaer, C Workman, ... Blood 120 (21), 1600, 2012 | | 2012 |
| RNA-Protein interactions A Re, E Kulberkyte, T Joshi, CT Workman | | |
