Identification of key aroma compounds and core functional microorganisms associated with aroma formation for Monascus-fermented cheese Y Wang, H Zeng, S Qiu, H Han, B Wang Food Chemistry 434, 137401, 2024 | 10 | 2024 |
Flux balance analysis-based metabolic modeling of microbial secondary metabolism: current status and outlook S Qiu, A Yang, H Zeng PLoS Computational Biology 19 (8), e1011391, 2023 | 7 | 2023 |
Dynamic metagenome‐scale metabolic modeling of a yogurt bacterial community S Qiu, H Zeng, Z Yang, WL Hung, B Wang, A Yang Biotechnology and Bioengineering 120 (8), 2186-2198, 2023 | 7 | 2023 |
DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates S Qiu, S Zhao, A Yang Briefings in Bioinformatics 25 (1), bbad506, 2024 | 5 | 2024 |
Machine learning based classification of yogurt aroma types with flavoromics S Qiu, H Han, H Zeng, B Wang Food Chemistry 438, 138008, 2024 | 3 | 2024 |
Quantitative sequence basis for the E. coli transcriptional regulatory network S Qiu, C Lamoureux, A Akbari, BO Palsson, DC Zielinski bioRxiv, 2022.02. 20.481200, 2022 | 2 | 2022 |
Metagenomic and flavoromic profiling reveals the correlation between the microorganisms and volatile flavor compounds in Monascus-fermented cheese Y Wang, Y Wang, S Qiu, B Wang, H Zeng Food Research International 188, 114483, 2024 | 1 | 2024 |
Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade‐off between secondary and primary metabolism S Qiu, Y Huang, S Liang, H Zeng, A Yang Microbial Biotechnology 17 (2), e14425, 2024 | 1 | 2024 |
Inferred regulons are consistent with regulator binding sequences in E. coli S Qiu, X Wan, Y Liang, CR Lamoureux, A Akbari, BO Palsson, ... PLOS Computational Biology 20 (1), e1011824, 2024 | | 2024 |
Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature S Qiu, B Hu, J Zhao, W Xu, A Yang bioRxiv, 2024.08. 12.607600, 2024 | | 2024 |
Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production S Qiu, A Yang, X Yang, W Li, H Zeng, Y Wang bioRxiv, 2024.04. 19.590233, 2024 | | 2024 |
Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture S Qiu, Z Yang, H Zeng, B Wang, A Yang Computer Aided Chemical Engineering 52, 2619-2624, 2023 | | 2023 |
The Promoter Sequence Basis for Transcription Regulatory Activity S Qiu University of California, San Diego, 2021 | | 2021 |