| Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study QY Zhao, Y Wang, YM Kong, D Luo, X Li, P Hao BMC bioinformatics 12 (14), 1-12, 2011 | 551 | 2011 |
| Global transcriptome profiles of Camellia sinensis during cold acclimation XC Wang, QY Zhao, CL Ma, ZH Zhang, HL Cao, YM Kong, C Yue, XY Hao, ... BMC genomics 14 (1), 1-15, 2013 | 320 | 2013 |
| The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods Z Cao, Y Yu, Y Wu, P Hao, Z Di, Y He, Z Chen, W Yang, Z Shen, X He, ... Nature communications 4 (1), 1-10, 2013 | 258 | 2013 |
| The landscape of A-to-I RNA editome is shaped by both positive and purifying selection Y Yu, H Zhou, Y Kong, B Pan, L Chen, H Wang, P Hao, X Li PLoS genetics 12 (7), e1006191, 2016 | 90 | 2016 |
| Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution Y Kong, L Cao, G Deikus, Y Fan, EA Mead, W Lai, Y Zhang, R Yong, ... Science 375 (6580), 515-522, 2022 | 76 | 2022 |
| Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus P Xu, Y Kong, D Song, C Huang, X Li, L Li BMC genomics 15 (1), 780, 2014 | 45 | 2014 |
| Decipher the ancestry of the plant-specific LBD gene family Y Kong, P Xu, X Jing, L Chen, L Li, X Li BMC genomics 18 (1), 951, 2017 | 36 | 2017 |
| Hygromycin‐resistance vectors for gene expression in Pichia pastoris J Yang, L Nie, B Chen, Y Liu, Y Kong, H Wang, L Diao Yeast 31 (4), 115-125, 2014 | 31 | 2014 |
| Navigating the pitfalls of mapping DNA and RNA modifications Y Kong, EA Mead, G Fang Nature Reviews Genetics, 1-19, 2023 | 27 | 2023 |
| The evolutionary landscape of intergenic trans-splicing events in insects Y Kong, H Zhou, Y Yu, L Chen, P Hao, X Li Nature communications 6, 8734, 2015 | 21 | 2015 |
| DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing L Chen, L Ou, X Jing, Y Kong, B Xie, N Zhang, H Shi, H Qin, X Li, P Hao Genome Biology 24 (1), 1-13, 2023 | 17 | 2023 |
| Identification of molecular processes needed for vascular formation through transcriptome analysis of different vascular systems P Xu, Y Kong, X Li, L Li BMC genomics 14 (1), 217, 2013 | 16 | 2013 |
| Different adaptations of dopamine release in nucleus accumbens shell and core of individual alcohol drinking groups of mice Y Liu, SE Montgomery, B Juarez, C Morel, S Zhang, Y Kong, ES Calipari, ... Neuropharmacology 175, 108176, 2020 | 13 | 2020 |
| De novo assembly of transcriptome from next-generation sequencing data X Li, Y Kong, QY Zhao, YY Li, P Hao Quantitative Biology 4 (2), 94-105, 2016 | 6 | 2016 |
| mEnrich-seq: methylation-guided enrichment sequencing of bacterial taxa of interest from microbiome L Cao, Y Kong, Y Fan, M Ni, A Tourancheau, M Ksiezarek, EA Mead, ... Nature Methods, 1-11, 2024 | 5 | 2024 |
| A novel transposable Mu-like prophage in Bacillus alcalophilus CGMCC 1.3604 (ATCC 27647) J Yang, Y Kong, X Li, S Yang Virologica Sinica 30 (1), 63-65, 2015 | 4 | 2015 |
