| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission Nature 609, 101–108, 2022 | 287 | 2022 |
| The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ... Science 377 (6609), 960-966, 2022 | 240* | 2022 |
| Timing the SARS-CoV-2 index case in Hubei province J Pekar, M Worobey, N Moshiri, K Scheffler, JO Wertheim Science 372 (6540), 412-417, 2021 | 198 | 2021 |
| Resurgence of SARS-CoV-2 infection in a highly vaccinated health system workforce J Keehner, LE Horton, NJ Binkin, LC Laurent, D Pride, CA Longhurst, ... New England Journal of Medicine 385 (14), 1330-1332, 2021 | 192 | 2021 |
| Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks A Rule, A Birmingham, C Zuniga, I Altintas, SC Huang, R Knight, ... PLoS computational biology 15 (7), e1007007, 2019 | 160* | 2019 |
| TreeCluster: Clustering biological sequences using phylogenetic trees M Balaban, N Moshiri, U Mai, X Jia, S Mirarab PloS one 14 (8), e0221068, 2019 | 125 | 2019 |
| Geniehd: Efficient dna pattern matching accelerator using hyperdimensional computing Y Kim, M Imani, N Moshiri, T Rosing 2020 Design, Automation & Test in Europe Conference & Exhibition (DATE), 115-120, 2020 | 89 | 2020 |
| ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes N Moshiri Bioinformatics 37 (5), 714-716, 2021 | 65 | 2021 |
| FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences N Moshiri, M Ragonnet-Cronin, JO Wertheim, S Mirarab Bioinformatics, bty921, 2018 | 52 | 2018 |
| Accelerators for classical molecular dynamics simulations of biomolecules D Jones, JE Allen, Y Yang, WF Drew Bennett, M Gokhale, N Moshiri, ... Journal of chemical theory and computation 18 (7), 4047-4069, 2022 | 31 | 2022 |
| TreeSwift: A massively scalable Python tree package N Moshiri SoftwareX 11, 100436, 2020 | 28 | 2020 |
| Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools R Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ... The Lancet Regional Health–Americas 19, 2023 | 26* | 2023 |
| Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the … A Crits-Christoph, K Gangavarapu, J Pekar, N Moshiri, R Singh, J Levy, ... | 17 | 2023 |
| The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction N Moshiri, KM Fisch, A Birmingham, P DeHoff, GW Yeo, K Jepsen, ... Scientific reports 12 (1), 5077, 2022 | 15 | 2022 |
| The dual-Barabási-Albert model N Moshiri arXiv preprint arXiv:1810.10538, 2018 | 15 | 2018 |
| Rapidx: High-performance reram processing in-memory accelerator for sequence alignment W Xu, S Gupta, N Moshiri, TŠ Rosing IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2023 | 7 | 2023 |
| Swapping metagenomics preprocessing pipeline components offers speed and sensitivity increases G Armstrong, C Martino, J Morris, B Khaleghi, J Kang, J DeReus, Q Zhu, ... Msystems 7 (2), e01378-21, 2022 | 7 | 2022 |
| Ultra efficient acceleration for de novo genome assembly via near-memory computing M Zhou, L Wu, M Li, N Moshiri, K Skadron, T Rosing 2021 30th International Conference on Parallel Architectures and Compilation …, 2021 | 7 | 2021 |
| HIV care prioritization using phylogenetic branch length N Moshiri, DM Smith, S Mirarab JAIDS Journal of Acquired Immune Deficiency Syndromes 86 (5), 626-637, 2021 | 7 | 2021 |
| Hyperspec: Ultrafast mass spectra clustering in hyperdimensional space W Xu, J Kang, W Bittremieux, N Moshiri, T Rosing Journal of proteome research 22 (6), 1639-1648, 2023 | 6 | 2023 |
Tajana RosingDistinguished Professor, UCSD在 ucsd.edu 的电子邮件经过验证
