Mapping Transcriptomic Vector Fields of Single Cells X Qiu, Y Zhang, JD Martin-Rufino, C Weng, S Hosseinzadeh, D Yang, ... Cell 185, 1–22, 2022 | 225 | 2022 |
ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python S Zhang, JM Krieger, Y Zhang, C Kaya, B Kaynak, K Mikulska-Ruminska, ... Bioinformatics 37 (20), 3657–9, 2021 | 106 | 2021 |
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior Y Zhang, P Doruker, B Kaynak, S Zhang, J Krieger, H Li, I Bahar Current opinion in structural biology 62, 14-21, 2020 | 85 | 2020 |
Curcumin modulates cannabinoid receptors in liver fibrosis in vivo and inhibits extracellular matrix expression in hepatic stellate cells by suppressing cannabinoid receptor … Z Zhang, Y Guo, S Zhang, Y Zhang, Y Wang, W Ni, D Kong, W Chen, ... European journal of pharmacology 721 (1-3), 133-140, 2013 | 62 | 2013 |
Mapping vector field of single cells X Qiu, Y Zhang, D Yang, S Hosseinzadeh, L Wang, R Yuan, S Xu, Y Ma, ... Biorxiv, 696724, 2019 | 30 | 2019 |
Metal binding mediated conformational change of XPA protein: a potential cytotoxic mechanism of nickel in the nucleotide excision repair J Hu, Z Hu, Y Zhang, X Gou, Y Mu, L Wang, XQ Xie Journal of molecular modeling 22, 1-19, 2016 | 21 | 2016 |
State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps Y Zhang, J Krieger, K Mikulska-Ruminska, B Kaynak, COS Sorzano, ... Progress in biophysics and molecular biology 160, 104-120, 2021 | 19 | 2021 |
Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis Y Zhang, S Zhang, J Xing, I Bahar The Journal of Chemical Physics 154 (19), 2021 | 8 | 2021 |
Graph-Dynamo: Learning stochastic cellular state transition dynamics from single cell data Y Zhang, X Qiu, JS Weissman, I Bahar, J Xing bioRxiv, 2023.09. 24.559170, 2023 | 2 | 2023 |