Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology H Schmidt, M Jirstrand Bioinformatics 22 (4), 514-515, 2006 | 586 | 2006 |
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 212 | 2020 |
Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011 | 167 | 2011 |
Reduction of a biochemical model with preservation of its basic dynamic properties S Danø, MF Madsen, H Schmidt, G Cedersund The FEBS journal 273 (21), 4862-4877, 2006 | 90 | 2006 |
A model-based approach to investigating the pathophysiological mechanisms of hypertension and response to antihypertensive therapies: extending the Guyton model KM Hallow, A Lo, J Beh, M Rodrigo, S Ermakov, S Friedman, H de Leon, ... American Journal of Physiology-Regulatory, Integrative and Comparative …, 2014 | 71 | 2014 |
Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB M Ullah, H Schmidt, KH Cho, O Wolkenhauer IEE Proceedings-Systems Biology 153 (2), 53-60, 2006 | 71 | 2006 |
Identification of small scale biochemical networks based on general type system perturbations H Schmidt, KH Cho, EW Jacobsen The FEBS Journal 272 (9), 2141-2151, 2005 | 65 | 2005 |
Linear systems approach to analysis of complex dynamic behaviours in biochemical networks H Schmidt, EW Jacobsen Systems biology 1 (1), 149-158, 2004 | 61 | 2004 |
Complexity reduction of biochemical rate expressions H Schmidt, MF Madsen, S Danø, G Cedersund Bioinformatics 24 (6), 848-854, 2008 | 59 | 2008 |
Network-level analysis of light adaptation in rod cells under normal and altered conditions D Dell’Orco, H Schmidt, S Mariani, F Fanelli Molecular bioSystems 5 (10), 1232-1246, 2009 | 55 | 2009 |
Quantitative systems pharmacology: an exemplar model‐building workflow with applications in cardiovascular, metabolic, and oncology drug development G Helmlinger, V Sokolov, K Peskov, KM Hallow, Y Kosinsky, V Voronova, ... CPT: pharmacometrics & systems pharmacology 8 (6), 380-395, 2019 | 48 | 2019 |
Mesoscopic Monte Carlo simulations of stochastic encounters between photoactivated rhodopsin and transducin in disc membranes D Dell'Orco, H Schmidt The journal of physical chemistry B 112 (14), 4419-4426, 2008 | 41 | 2008 |
SBaddon: high performance simulation for the Systems Biology Toolbox for MATLAB H Schmidt Bioinformatics 23 (5), 646-647, 2007 | 39 | 2007 |
Identifying feedback mechanisms behind complex cell behavior H Schmidt, EW Jacobsen IEEE Control Systems Magazine 24 (4), 91-102, 2004 | 32 | 2004 |
Scaling and integration of kinetic models of photosynthesis: Towards comprehensive e-photosynthesis L Nedbal, J Červený, H Schmidt Photosynthesis in silico: Understanding Complexity from Molecules to …, 2009 | 27 | 2009 |
Selecting control configurations for performance with independent design H Schmidt, EW Jacobsen Computers & chemical engineering 27 (1), 101-109, 2003 | 26 | 2003 |
E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light L Nedbal, J Červený, U Rascher, H Schmidt Photosynthesis research 93 (1), 223-234, 2007 | 24 | 2007 |
Zooming of states and parameters using a lumping approach including back-translation M Sunnåker, H Schmidt, M Jirstrand, G Cedersund BMC systems biology 4, 1-21, 2010 | 21 | 2010 |
Enhancing population pharmacokinetic modeling efficiency and quality using an integrated workflow H Schmidt, A Radivojevic Journal of pharmacokinetics and pharmacodynamics 41, 319-334, 2014 | 19 | 2014 |
SBML export interface for the systems biology toolbox for MATLAB H Schmidt, G Drews, J Vera, O Wolkenhauer Bioinformatics 23 (10), 1297-1298, 2007 | 16 | 2007 |