| Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows SM Salas, P Czarnewski, LB Kuemmerle, S Helgadottir, ... BioRxiv, 2023.02. 13.528102, 2023 | 29 | 2023 |
| TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data N Pielawski, A Andersson, C Avenel, A Behanova, E Chelebian, A Klemm, ... Heliyon 9 (5), 2023 | 23 | 2023 |
| TissUUmaps 3: interactive visualization and quality assessment of large-scale spatial omics data N Pielawski, A Andersson, C Avenel, A Behanova, E Chelebian, A Klemm, ... BioRxiv, 2022 | 11 | 2022 |
| Istdeco: In situ transcriptomics decoding by deconvolution A Andersson, F Diego, FA Hamprecht, C Wählby bioRxiv, 2021.03. 01.433040, 2021 | 9 | 2021 |
| End-to-end multiple instance learning with gradient accumulation A Andersson, N Koriakina, N Sladoje, J Lindblad 2022 IEEE International Conference on Big Data (Big Data), 2742-2746, 2022 | 6 | 2022 |
| Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3 A Behanova, C Avenel, A Andersson, E Chelebian, A Klemm, L Wik, ... Biological Imaging 3, e6, 2023 | 4* | 2023 |
| Transcriptome-supervised classification of tissue morphology using deep learning A Andersson, G Partel, L Solorzano, C Wählby 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 1630-1633, 2020 | 3 | 2020 |
| Points2regions: Fast interactive clustering of in situ transcriptomics data A Andersson, A Behanova, C Avenel, C Wählby, F Malmberg bioRxiv, 2022 | 2 | 2022 |
| Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation … A Andersson, M Escriva Conde, O Surova, P Vermeulen, C Wählby, ... Clinical Cancer Research 30 (19), 4517-4529, 2024 | | 2024 |
| Data Augmentation for Object Detection using Deep Reinforcement Learning A Andersson, N Hallerfelt | | 2024 |
| Computational Methods for Image-Based Spatial Transcriptomics A Andersson Acta Universitatis Upsaliensis, 2024 | | 2024 |
| An Analytical Neighborhood Enrichment Score for Spatial Omics A Andersson | | 2024 |
| Points2Regions: Fast, interactive clustering of imaging‐based spatial transcriptomics data A Andersson, A Behanova, C Avenel, J Windhager, F Malmberg, ... Cytometry Part A, 2024 | | 2024 |
| Cell Segmentation of in situ Transcriptomics Data Using Signed Graph Partitioning A Andersson, A Behanova, C Wählby, F Malmberg International Workshop on Graph-Based Representations in Pattern Recognition …, 2023 | | 2023 |
| Points2Regions: Fast Interactive Clustering ofin SituTranscriptomics Data A Andersson, A Behanova, C Avenel, C Wählby, F Malmberg | | 2022 |
