| Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ... Genome research 25 (11), 1757-1770, 2015 | 379 | 2015 |
| Nfib promotes metastasis through a widespread increase in chromatin accessibility SK Denny, D Yang, CH Chuang, JJ Brady, JS Lim, BM Grüner, SH Chiou, ... Cell 166 (2), 328-342, 2016 | 361 | 2016 |
| Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping VI Risca, SK Denny, AF Straight, WJ Greenleaf Nature 541 (7636), 237-241, 2017 | 165 | 2017 |
| Intertumoral heterogeneity in SCLC is influenced by the cell type of origin D Yang, SK Denny, PG Greenside, AC Chaikovsky, JJ Brady, Y Ouadah, ... Cancer discovery 8 (10), 1316-1331, 2018 | 137 | 2018 |
| High-throughput investigation of diverse junction elements in RNA tertiary folding SK Denny, N Bisaria, JD Yesselman, R Das, D Herschlag, WJ Greenleaf Cell 174 (2), 377-390. e20, 2018 | 93 | 2018 |
| A quantitative and predictive model for RNA binding by human Pumilio proteins I Jarmoskaite, SK Denny, PP Vaidyanathan, WR Becker, JOL Andreasson, ... Molecular cell 74 (5), 966-981. e18, 2019 | 73 | 2019 |
| Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation JD Yesselman, SK Denny, N Bisaria, D Herschlag, WJ Greenleaf, R Das Proceedings of the National Academy of Sciences 116 (34), 16847-16855, 2019 | 41 | 2019 |
| Linking RNA sequence, structure, and function on massively parallel high-throughput sequencers SK Denny, WJ Greenleaf Cold Spring Harbor Perspectives in Biology 11 (10), a032300, 2019 | 24 | 2019 |
| Multifaceted role for p53 in pancreatic cancer suppression SS Mello, BM Flowers, PK Mazur, JJ Lee, F Müller, SK Denny, S Ferreira, ... Proceedings of the National Academy of Sciences 120 (10), e2211937120, 2023 | 22 | 2023 |
| Intertumoral heterogeneity in SCLC is influenced by the cell type of origin. Cancer Discov. 2018; 8: 1316–1331. doi: 10.1158/2159-8290 D Yang, SK Denny, PG Greenside, AC Chaikovsky, JJ Brady, Y Ouadah, ... CD-17-0987.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0 | 19 | |
| High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs SL Bonilla, SK Denny, JH Shin, A Alvarez-Buylla, WJ Greenleaf, ... Proceedings of the National Academy of Sciences 118 (33), e2109085118, 2021 | 13 | 2021 |
| Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding WR Becker, I Jarmoskaite, K Kappel, PP Vaidyanathan, SK Denny, R Das, ... bioRxiv, 571588, 2019 | 10 | 2019 |
| RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix JD Yesselman, SK Denny, N Bisaria, D Herschlag, WJ Greenleaf, R Das BioRxiv, 341107, 2018 | 8 | 2018 |
| A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4 C Sadée, LD Hagler, WR Becker, I Jarmoskaite, PP Vaidyanathan, ... Nature Communications 13 (1), 4522, 2022 | 6 | 2022 |
| Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements JH Shin, SL Bonilla, SK Denny, WJ Greenleaf, D Herschlag Proceedings of the National Academy of Sciences 120 (11), e2220485120, 2023 | 4 | 2023 |
| Engineered proteins B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent 11,560,555, 2023 | 4 | 2023 |
| Engineered casx systems B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/542,219, 2022 | 4 | 2022 |
| Compositions and methods for the targeting of SOD1 B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent 11,613,742, 2023 | 3 | 2023 |
| Compositions and methods for the targeting of pcsk9 B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/791,130, 2023 | 2 | 2023 |
| Compositions and methods for use in immunotherapy B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/641,404, 2023 | 2 | 2023 |
