An integrated meta-analysis of peripheral blood metabolites and biological functions in major depressive disorder J Pu, Y Liu, H Zhang, L Tian, S Gui, Y Yu, X Chen, Y Chen, L Yang, Y Ran, ... Molecular psychiatry 26 (8), 4265-4276, 2021 | 164 | 2021 |
Systematic analysis of adverse event reports for sex differences in adverse drug events Y Yu, J Chen, D Li, L Wang, W Wang, H Liu Scientific reports 6, 24955, 2016 | 124 | 2016 |
An omnibus test for differential distribution analysis of microbiome sequencing data J Chen, E King, R Deek, Z Wei, Y Yu, D Grill, K Ballman Bioinformatics 34 (4), 643-651, 2018 | 87 | 2018 |
Predictive modeling of microbiome data using a phylogeny-regularized generalized linear mixed model J Xiao, L Chen, S Johnson, Y Yu, X Zhang, JC Chen Frontiers in Microbiology 9, 1391, 2018 | 48 | 2018 |
Metabolomic changes in animal models of depression: a systematic analysis J Pu, Y Liu, S Gui, L Tian, Y Yu, X Song, X Zhong, X Chen, W Chen, ... Molecular psychiatry 26 (12), 7328-7336, 2021 | 46 | 2021 |
MENDA: a comprehensive curated resource of metabolic characterization in depression. J Pu, Y Yu, Y Liu, L Tian, S Gui, X Zhong, C Fan, S Xu, X Song, L Liu, ... Briefings in Bioinformatics, bbz055, 2019 | 41 | 2019 |
Detecting signals in noisy data-can ensemble classifiers help identify adverse drug reaction in tweets M Rastegar-Mojarad, RK Elayavilli, Y Yu, H Liu Proceedings of the Social Media Mining Shared Task Workshop at the Pacific …, 2016 | 39 | 2016 |
Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records N Zong, A Wen, DJ Stone, DK Sharma, C Wang, Y Yu, H Liu, Q Shi, ... JCO Clinical Cancer Informatics 4, 201-209, 2020 | 35 | 2020 |
A phylogeny-regularized sparse regression model for predictive modeling of microbial community data J Xiao, L Chen, Y Yu, X Zhang, J Chen Frontiers in microbiology 9, 3112, 2018 | 27 | 2018 |
Retinoid X receptor alpha is a spatiotemporally predominant therapeutic target for anthracycline-induced cardiotoxicity X Ma, P Zhu, Y Ding, H Zhang, Q Qiu, AV Dvornikov, Z Wang, M Kim, ... Science Advances 6 (5), eaay2939, 2020 | 26 | 2020 |
Computational drug repurposing based on electronic health records: a scoping review N Zong, A Wen, S Moon, S Fu, L Wang, Y Zhao, Y Yu, M Huang, Y Wang, ... NPJ digital medicine 5 (1), 77, 2022 | 24 | 2022 |
Drug–target prediction utilizing heterogeneous bio-linked network embeddings N Zong, RSN Wong, Y Yu, A Wen, M Huang, N Li Briefings in Bioinformatics, bbz147, 2019 | 24 | 2019 |
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration Y Yu, N Zong, A Wen, S Liu, DJ Stone, D Knaack, AM Chamberlain, ... Journal of Biomedical Informatics 127, 104002, 2022 | 22 | 2022 |
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model Y Yu, KJ Ruddy, N Hong, S Tsuji, A Wen, ND Shah, G Jiang Journal of biomedical informatics 91, 103119, 2019 | 22 | 2019 |
Systematic identification of latent disease-gene associations from PubMed articles Y Zhang, F Shen, MR Mojarad, D Li, S Liu, C Tao, Y Yu, H Liu PloS one 13 (1), e0191568, 2018 | 22 | 2018 |
Effects of pharmacological treatment on metabolomic alterations in animal models of depression J Pu, Y Liu, S Gui, L Tian, Y Yu, D Wang, X Zhong, W Chen, X Chen, ... Translational Psychiatry 12 (1), 175, 2022 | 21 | 2022 |
Vascular endothelial growth factor in major depressive disorder, schizophrenia, and bipolar disorder: A network meta-analysis J Pu, Y Liu, S Gui, L Tian, S Xu, X Song, X Zhong, Y Chen, X Chen, Y Yu, ... Psychiatry Research 292, 113319, 2020 | 20 | 2020 |
Coverage Evaluation of CTCAE for Capturing the Immune-related Adverse Events Leveraging Text Mining Technologies Y Yu, KJ Ruddy, S Tsuji, N Hong, H Liu, N Shah, G Jiang AMIA Summits on Translational Science Proceedings 2019, 771, 2019 | 20 | 2019 |
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data N Zong, DJ Stone, DK Sharma, A Wen, C Wang, Y Yu, M Huang, S Liu, ... International Journal of Medical Informatics 145, 104308, 2021 | 17 | 2021 |
Hippocampus-specific regulation of long non-coding RNA and mRNA expression in germ-free mice C Zhou, X Rao, H Wang, B Zeng, Y Yu, J Chen, J Zhong, X Qi, L Zeng, ... Functional & integrative genomics 20, 355-365, 2020 | 17 | 2020 |