Large-scale multi-omic analysis of COVID-19 severity KA Overmyer, E Shishkova, IJ Miller, J Balnis, MN Bernstein, ... Cell systems 12 (1), 23-40. e7, 2021 | 530 | 2021 |
Phospholipase iPLA2β averts ferroptosis by eliminating a redox lipid death signal WY Sun, VA Tyurin, K Mikulska-Ruminska, IH Shrivastava, ... Nature chemical biology 17 (4), 465-476, 2021 | 216 | 2021 |
An antifungal polyketide associated with horizontally acquired genes supports symbiont-mediated defense in Lagria villosa beetles LV Flórez, K Scherlach, IJ Miller, A Rodrigues, JC Kwan, C Hertweck, ... Nature communications 9 (1), 2478, 2018 | 113 | 2018 |
Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests JG Meyer, S Liu, IJ Miller, JJ Coon, A Gitter Journal of Chemical Information and Modeling 59 (10), 4438-4449, 2019 | 100 | 2019 |
Microbial community response of nitrifying sequencing batch reactors to silver, zero-valent iron, titanium dioxide and cerium dioxide nanomaterials Y Ma, JW Metch, EP Vejerano, IJ Miller, EC Leon, LC Marr, PJ Vikesland, ... Water Research 68, 87-97, 2015 | 90 | 2015 |
Autometa: automated extraction of microbial genomes from individual shotgun metagenomes IJ Miller, ER Rees, J Ross, I Miller, J Baxa, J Lopera, RL Kerby, FE Rey, ... Nucleic acids research 47 (10), e57-e57, 2019 | 79 | 2019 |
The NCI genomic data commons AP Heath, V Ferretti, S Agrawal, M An, JC Angelakos, R Arya, R Bajari, ... Nature genetics 53 (3), 257-262, 2021 | 78 | 2021 |
Defining mitochondrial protein functions through deep multiomic profiling JW Rensvold, E Shishkova, Y Sverchkov, IJ Miller, A Cetinkaya, A Pyle, ... Nature 606 (7913), 382-388, 2022 | 70 | 2022 |
Real-time health monitoring through urine metabolomics IJ Miller, SR Peters, KA Overmyer, BR Paulson, MS Westphall, JJ Coon NPJ digital medicine 2 (1), 109, 2019 | 56 | 2019 |
A large-scale genome–lipid association map guides lipid identification V Linke, KA Overmyer, IJ Miller, DR Brademan, PD Hutchins, EA Trujillo, ... Nature metabolism 2 (10), 1149-1162, 2020 | 51 | 2020 |
Lack of overt genome reduction in the bryostatin-producing bryozoan symbiont “Candidatus Endobugula sertula” IJ Miller, N Vanee, SS Fong, GE Lim-Fong, JC Kwan Applied and environmental microbiology 82 (22), 6573-6583, 2016 | 47 | 2016 |
Increased biosynthetic gene dosage in a genome-reduced defensive bacterial symbiont J Lopera, IJ Miller, KL McPhail, JC Kwan Msystems 2 (6), 10.1128/msystems. 00096-17, 2017 | 39 | 2017 |
Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome IJ Miller, TR Weyna, SS Fong, GE Lim-Fong, JC Kwan Scientific reports 6 (1), 34362, 2016 | 36 | 2016 |
Quantitative structure retention relationship models in an analytical quality by design framework: Simultaneously accounting for compound properties, mobile-phase conditions … K Muteki, JE Morgado, GL Reid, J Wang, G Xue, FW Riley, JW Harwood, ... Industrial & Engineering Chemistry Research 52 (35), 12269-12284, 2013 | 35 | 2013 |
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut Q Zhang, V Linke, KA Overmyer, LL Traeger, K Kasahara, IJ Miller, ... Nature microbiology 8 (3), 424-440, 2023 | 29 | 2023 |
Interpreting microbial biosynthesis in the genomic age: biological and practical considerations IJ Miller, MG Chevrette, JC Kwan Marine Drugs 15 (6), 165, 2017 | 27 | 2017 |
Argonaut: A web platform for collaborative multi-omic data visualization and exploration DR Brademan, IJ Miller, NW Kwiecien, DJ Pagliarini, MS Westphall, ... Patterns 1 (7), 2020 | 26 | 2020 |
Omics Technologies to Understand Activation of a Biosynthetic Gene Cluster in Micromonospora sp. WMMB235: Deciphering Keyicin Biosynthesis D Acharya, I Miller, Y Cui, DR Braun, ME Berres, MJ Styles, L Li, J Kwan, ... ACS Chemical Biology 14 (6), 1260-1270, 2019 | 11 | 2019 |
Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease I Miller, M Totrov, L Korotchkina, DN Kazyulkin, AV Gudkov, S Korolev Nucleic Acids Research 49 (19), 11350-11366, 2021 | 6 | 2021 |
Increased biosynthetic gene dosage in a genome-reduced defensive bacterial symbiont. mSystems 2: e00096-17 J Lopera, IJ Miller, KL McPhail, JC Kwan | 6 | 2017 |